Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_031017.1 Length=32409 Score E Sequences producing significant alignments: (Bits) Value seq273 147 5e-31 seq1321 95.1 3e-15 >seq273 Length=32108 Score = 147 bits (162), Expect = 5e-31 Identities = 172/228 (75%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 24813 ATATTGATTTAGCTGGTGCTGGTCGTGCGATTATTGATGGATTTGTCGGTGGGCTTAAAA 24872 || ||||| || || |||||| | || ||||| || | || | |||||||| Sbjct 4740 ATTTTGATCTATTTGCGGCTGGTAGAGCAATTATGGAAAGTTTCACTGATGGGCTTAC-- 4683 Query 24873 GCA--CATGGGAAGCCG-GAAAGAAATTTGTAGGTGGAATTGCTGATTGGATTAAAGAAC 24929 ||| |||||||||| |||||| ||||| |||| |||| ||||||||| ||||| Sbjct 4682 GCATGCATGGGAAGCGACGAAAGAG-TTTGTCAGTGGTATTGGTGATTGGATACGAGAAC 4624 Query 24930 ATAAAGGACCAATTAGTTATGATAGAAAACTACTAATTCCAGCTGGTGAAGCTATTATGG 24989 ||||||| || |||||||| ||||||||||| |||||||||||||| |||| ||||||| Sbjct 4623 ATAAAGGTCCTATTAGTTACGATAGAAAACTTTTAATTCCAGCTGGTAAAGCGATTATGG 4564 Query 24990 GTGGATTTAATGACAGTTTGATGGAAAACTTTAAAGCTGTTCaaaaaa 25037 |||| || ||||| || || | | |||||| |||| ||||||| Sbjct 4563 GTGGTTTAAATGAAAGCTTACAAGCGAGTTTTAAATCTGTCCAAAAAA 4516 >seq1321 Length=4872 Score = 95.1 bits (104), Expect = 3e-15 Identities = 371/571 (65%), Gaps = 43/571 (8%) Strand=Plus/Plus Query 30746 TTTGGCTATGCTCATGATAAATTTGCTTTTAGCCAAATCGGAGG---AACTTACGGTGGT 30802 ||||| ||||| ||||||||||| | || ||||| || || || || ||| Sbjct 2017 TTTGGTTATGCACATGATAAATTCTCAATTTCACAAATTGGTGGGCAAAACAACTATGGG 2076 Query 30803 TCATTCGTGGACCAAGCCACTTATCCAACGCAAGTAGCTTCAGCAATTGCTCAAGGTAAA 30862 ||| || | |||| |||||| | | ||||||||| | ||||||||||||||| Sbjct 2077 --ATTTATG-ATCAAGTTACTTATTCTAGTCAAGTAGCTAGTACGATTGCTCAAGGTAAA 2133 Query 30863 CGAGCGCATACTTACATTTGGTACCAAGTCGGAGGTTCGCAAGAAGTAGCCAAAGCAGCA 30922 ||||||||||| || | |||| ||| || | | | ||| || ||| || | Sbjct 2134 CGAGCGCATACGTATGTATGGTGGCAAAACGTCCTTACCTACGAAAATGCAAAACAAGTA 2193 Query 30923 CTTGACCGCTATTTACCAAGAATTCAAACACCAAAGAATTCTATTGTAGCTTTAGACTAC 30982 | || || |||||| | | |||||||||||||| || ||||| || ||||| Sbjct 2194 TTAGATTACTTTTTACCTAAAGTTCAAACACCAAAGGGATCAATTGTCGCCTTAGATGCG 2253 Query 30983 GAAGGTGGAGCAAGTGGAGATAAACAAGCGAATACTGATGCGATTCTTTATGGAATGCGA 31042 |||| || | ||| ||| | |||| | || | || | || Sbjct 2254 GAAGACGGCGTT------------CAATCGA---CGGATGTAACGCTATG-GGCGTTAGA 2297 Query 31043 CG-TGTAAAAGCTGCTGGATATACTCCAATGTATTATTCTTACAAGCCTTAC---ACTTT 31098 | | | |||| ||||||||||| || ||| ||| ||||| || |||| Sbjct 2298 CTATATCAAAGAGGCTGGATATACACCGATGCTTTACGGATACAAAGGGTATCTTACTTC 2357 Query 31099 GGCTAATGTCAATTATAAGCAAATCATCAAAGA-GTTTCCTAACTCGCTATGGATTGCGG 31157 || ||| | |||| | || | |||||| || || | | ||||||| || | Sbjct 2358 ATCTTATG--ATTTATCACGAATTG--CAAAGAAGTATC---AAT---TATGGATGGCAG 2407 Query 31158 CATATCCCAATTATGAAGTAACACCAGTTCCAAACTATAGCT-TCTTCCCAAGTATGGAC 31216 |||||| |||||||||| ||||| |||||| || | | | |||| | || | Sbjct 2408 AATATCCAGATTATGAAGTGACACCTTATCCAAATTACAATTATTTTCCTTCATTTGAA- 2466 Query 31217 GGAATTTCAGTATTC--CAGTTCACATCAACTTATATTGCTGGCGGACTTGATGGAAATG 31274 ||| || ||||| |||||||| ||||| || |||| || || || ||||| || | Sbjct 2467 --AATATCGGTATTTTTCAGTTCACGTCAACCTACGTTGCAGGAGGGCTAGATGGTAACG 2524 Query 31275 TTGATTTAACAGGAATCACAGATAATGGATA 31305 ||||||||||||| || || |||||||| || Sbjct 2525 TTGATTTAACAGGTATTACTGATAATGGTTA 2555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103580345893944