Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_031023.1 Length=32649 Score E Sequences producing significant alignments: (Bits) Value seq884 136 8e-28 seq641 136 8e-28 seq273 109 1e-19 >seq884 Length=19560 Score = 136 bits (150), Expect = 8e-28 Identities = 195/275 (71%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 26885 GTCGTATTGGTTGGACGCTTAACTAAAGAACCAGAATTAAAACACACCGGAAATAATATC 26944 || || || |||||||| ||||| ||||| ||| ||| |||||| || | | Sbjct 811 GTTGTGTTAGTTGGACGTTTAACGAAAGATATAGATTTACGCTACACCGCAAGTGGTTCT 870 Query 26945 GCAGTAGCATCTTTCAGCCTTGCGGTTAACCGTAACTTTAAAGACGCTAACGGAGAGCGT 27004 ||||| | | || | ||||| || ||||||||||||| | || ||||| || || Sbjct 871 GCAGTTGGAAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGA 930 Query 27005 GAAACTGACTTTATTAACTGTGTCATTTGGCGACAACAGGCTGAAAATTTGGCTAATTGG 27064 ||| | || ||||| |||||||| |||||||| | | ||||||| ||||||||| Sbjct 931 GAAGCGGATTTTATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTAT 990 Query 27065 GCTAAAAAAGGCGCATTAATTGGAATCACTGGACGTATTCAGACTCGTAGCTATGAAAAT 27124 || ||||| ||||| | ||| | ||| | ||||| ||||||| ||||| || Sbjct 991 ACTCGTAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAAC 1050 Query 27125 CAACAGGGGCAACGAGTGTATGTGACAGAGGTAGT 27159 ||||| || ||||| || |||||||| || || || Sbjct 1051 CAACAAGGCCAACGTGTCTATGTGACTGAAGTTGT 1085 >seq641 Length=27874 Score = 136 bits (150), Expect = 8e-28 Identities = 195/275 (71%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 26885 GTCGTATTGGTTGGACGCTTAACTAAAGAACCAGAATTAAAACACACCGGAAATAATATC 26944 || || || |||||||| ||||| ||||| ||| ||| |||||| || | | Sbjct 27064 GTTGTGTTAGTTGGACGTTTAACGAAAGATATAGATTTACGCTACACCGCAAGTGGTTCT 27005 Query 26945 GCAGTAGCATCTTTCAGCCTTGCGGTTAACCGTAACTTTAAAGACGCTAACGGAGAGCGT 27004 ||||| | | || | ||||| || ||||||||||||| | || ||||| || || Sbjct 27004 GCAGTTGGAAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGA 26945 Query 27005 GAAACTGACTTTATTAACTGTGTCATTTGGCGACAACAGGCTGAAAATTTGGCTAATTGG 27064 ||| | || ||||| |||||||| |||||||| | | ||||||| ||||||||| Sbjct 26944 GAAGCGGATTTTATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTAT 26885 Query 27065 GCTAAAAAAGGCGCATTAATTGGAATCACTGGACGTATTCAGACTCGTAGCTATGAAAAT 27124 || ||||| ||||| | ||| | ||| | ||||| ||||||| ||||| || Sbjct 26884 ACTCGTAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAAC 26825 Query 27125 CAACAGGGGCAACGAGTGTATGTGACAGAGGTAGT 27159 ||||| || ||||| || |||||||| || || || Sbjct 26824 CAACAAGGCCAACGTGTCTATGTGACTGAAGTTGT 26790 >seq273 Length=32108 Score = 109 bits (120), Expect = 1e-19 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 11182 TTTATAAGTGGAATTGGAGATTGGATTCGGAAGCATAAAGGTCCAATTCGTGTCGACAGA 11241 ||| | ||||| ||||| |||||||| || | ||||||||||| ||| || ||| ||| Sbjct 4657 TTTGTCAGTGGTATTGGTGATTGGATACGAGAACATAAAGGTCCTATTAGTTACGATAGA 4598 Query 11242 AAACTTTTAATTCCCGCTGGTAATGCCATTATGAATGGTTTAAAT 11286 |||||||||||||| |||||||| || |||||| |||||||||| Sbjct 4597 AAACTTTTAATTCCAGCTGGTAAAGCGATTATGGGTGGTTTAAAT 4553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104348295077304