Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq71 540 1e-148 seq7 291 1e-73 >seq71 Length=1348405 Score = 540 bits (598), Expect = 1e-148 Identities = 1242/1854 (67%), Gaps = 36/1854 (2%) Strand=Plus/Plus Query 76802 TGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAA 76861 ||| || || || |||| || ||||| || ||||| || || |||| || || || Sbjct 494669 TGCTGGCTTCGTGCGTAAGTAATACATGCCCGTTTTGAGTCCTGCTTTCCAACCATAAAA 494728 Query 76862 ATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACT 76921 || || || || ||| ||| | || ||||| | || ||||| | ||| || || Sbjct 494729 GTGTATAGAGGTGAGCTTGCCATAGTTGGGCTCGGCCACGTGTATATTGAACGATTGGCT 494788 Query 76922 TTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTC 76981 |||||||||||| || || | ||| || |||||||| || ||| || | ||| || Sbjct 494789 TTGATCGATGAATGCGCCACGATCTGCAGCCATTTTGATGGAGGTTTTCACTGAAATCTC 494848 Query 76982 CCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA-GGTTTGTAT--TTTGAATGGA 77038 ||||| ||| ||| | | | |||| | || | ||||| || |||| || || Sbjct 494849 CCAAACAGTCTTGTACAGATCGCGTATATGTTTCGGTATGGTTTCAATGTTTTGTATAGA 494908 Query 77039 ACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAA 77098 ||||| || || |||||| ||||| || |||||||||| |||||| | ||| || | Sbjct 494909 ACCACGATGTGTTATAATGGTATTTTTCATATCATCATCCCACAAACCCAACTCGGTGAG 494968 Query 77099 AACTC-TAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGT 77157 | | | ||| || ||| |||| || | ||| ||||| || || | || | ||| || | Sbjct 494969 ATCGCGTAACAAG-TGATGATTGACAACTTGGAATTCACCCGAAAGCACACGACGTGTAT 495027 Query 77158 AAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAG 77217 ||||||| || || ||||| | || ||||| || |||| |||||| || ||||||| Sbjct 495028 AAATATTCGAAGTGTACGGTTCAAACGACTCATTATTGCCCATAATTTGTGCGGTAGAAG 495087 Query 77218 CAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTT 77277 |||||||||| ||||| | ||| || || | | ||||||| | ||||| || | Sbjct 495088 CAGTTGGCATCGGTGCAAGCAACAATGAGTTGCGTACACCATGTTGCTTTATTTTCTCCT 495147 Query 77278 TTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAA 77337 | | | |||| | ||| ||||| | || |||||| | || |||||||| | Sbjct 495148 TCAATTCGGTCCAGTTCCAGAGATCAGTTGGCGTTTTATCCCACATGTCATATTGTAGTA 495207 Query 77338 TTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTT 77397 | || || || | ||| || | |||||| || |||| || | | ||||||| | || Sbjct 495208 TACCCTTGCTGACTGGTGAACCTTCATATGTCTCGTAAGTGCCATATTTTTCAGCCAATT 495267 Query 77398 CACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTT 77457 ||||||| ||||||||||| || || ||||| |||||||| || | | ||| | | Sbjct 495268 CACAACTGGCTTCCAATGCGCCATAGTAAATAGTTTCGAATATTTGTTGATTCAACAAGT 495327 Query 77458 GTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAA 77517 ||| ||| ||| || | ||| || | | | ||| ||||| || || || || || | Sbjct 495328 ATGCCTCATCACTTTCGTATGGAAAACGCATTAAAATTAAGGCGTCGGCAAAACCTTGTA 495387 Query 77518 CTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAAT 77577 ||||||||||| || | ||||| | ||| || | || || || || | ||||||| Sbjct 495388 TGCCAATACCAATGGGACGATGTCGCAAATTCGATTTCTTGGCCTCCGGTAAGGGATAAT 495447 Query 77578 AATTAATGTCTATAATTTTATTGAGATTTC---TAACAACTACTTTAACCACGTCCTTTA 77634 ||| | |||||| ||||| || | ||| | |||||| | | | || | ||||| Sbjct 495448 GATTGACGTCTATGATTTTGTTCAAATTACGCGTAACAATTTTTGTGAC----TTCTTTA 495503 Query 77635 ----GTTTAAGAAAATCAAATCTTCCATC---TATAACAAACATGTTCAAAGCTATAGAT 77687 |||| ||| ||| | || ||| | | ||| |||||||||| ||||| || Sbjct 495504 AGCCGTTT---AAAGTCATACGTTTTATCTGGTGTGACATACATGTTCAATGCTATTGAG 495560 Query 77688 GCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGA 77747 |||| ||| ||||| |||||||| | | || ||||| | || |||||||| | | Sbjct 495561 GCTAAATTGCAAACAGCTACCTCGTCGGGTGCGGAATATTCAACAATTTCGGTACACAAA 495620 Query 77748 TTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTA 77807 ||||||||||| || ||||| | ||| || || || |||||| ||||||| | || ||| Sbjct 495621 TTACTACATTTAATCGTGCCAATATTCTGCTGATTACTCTTTCTATTGCAAGCATCTTTA 495680 Query 77808 TAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACT 77867 || | || |||| || ||||| || | ||| ||||| ||||| | ||| | |||| Sbjct 495681 TACAACATGTACGGTGTGCCGGTCTCTACCTGCGATTCAATAATGGCAAACCA-AAGACT 495739 Query 77868 CT-AGCTTTTATCAT-AGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTT 77925 | ||||| | | | ||| | | || | ||| |||||||| ||||| | Sbjct 495740 TTGTGCTTTAACCTTCTTATTAGCA-CGTCCTTCTTGTTCATATTTCTCATATAATTTCT 495798 Query 77926 CAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACC 77985 | || || || ||||| || |||| || || || || | || ||| ||||| | |||| Sbjct 495799 CGAACTCTTCACCCCATACTTCATGTAAACCCGGACACTTATGTGGACACATTAGCGACC 495858 Query 77986 AGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATA 78045 |||| |||| | | || ||| |||||| ||||| |||||||| | ||| |||| Sbjct 495859 AGTCTTCATCGGCTTCGACACGTCGCATAAATAGATCCGGTATCCACAAGGCATAGAATA 495918 Query 78046 GATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAA 78105 ||||| | | ||| ||||| || || ||||| || || | ||| | |||||| | || Sbjct 495919 AATCTCTTGCGCGATGCTCTTCTTTGCCAGTATTTTTCTTCAAATCCAAAAACTCGAAAA 495978 Query 78106 TATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCT 78165 || | |||||||||||| ||||| || || | | || || || ||| || || | Sbjct 495979 CGTCCGCATGCCATGGTTCCAGATAGATGGCAAAGGCGCCGGGACGCTTACCGCCACCTT 496038 Query 78166 GATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATG 78225 |||| | ||| | || |||||| | ||||||| |||||| | | ||| || || | Sbjct 496039 GATCAACATAACGTGCCACATTATTAAACACTCTCAGCATTGGCACTAAACCATTGGAAG 496098 Query 78226 TTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAAT--ATTACTAATGGATATCCC 78283 | |||||||| || | ||| | | || | ||||| || | | | || | | || Sbjct 496099 TGCCATTTGTACCCGCAATTGCAGTGCCTTTCGCGCGTATGCAATGCACATTCAAA--CC 496156 Query 78284 TATTCCTCCTGCCATCTTAGATATTAGAGCGCA---ACGTTTCAATGTATCGTAGATACC 78340 || || ||||| || || || | || || | || | |||| | | ||||| Sbjct 496157 AATACCGCCTGCAGATTTGGAGATCAATGCACAGTGATGTGCCGATGT---GAAAATACC 496213 Query 78341 CTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGT 78400 || || || |||| |||| |||| ||||| || |||| ||| | || || Sbjct 496214 GTCAATTGAATCGTCCACCATGGTAAGCAGAAAGCACGATGACAATTGCGGTTGCTTGGT 496273 Query 78401 TCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTA 78460 | ||| |||| || || || ||||| ||||| | |||||||| | ||||| Sbjct 496274 GGCAGCAGCGAATAGCGTTGGTGAGGCATGTGTAAAATAACGCTCAGAAAGCAAGTTGTA 496333 Query 78461 TGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACAT 78520 ||||||||| || | || || || ||| || || | || || ||||| ||||| Sbjct 496334 TGTTTCAATTGCGGCATCAATATCTTCACCATGTATACCGATGGCAACGCGCATTAACAT 496393 Query 78521 ATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 78580 || || || | ||||| | || ||| | || | ||| || || ||| | || Sbjct 496394 GTGTTGCGGACGCTCAACAATTTTGCCATTCAACTTGAGCAAATACGAACGTTCGAGTGT 496453 Query 78581 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATT 78634 ||||||||||||||| || || |||||| | || || || ||| | || || Sbjct 496454 TTTAAAACCAAAATAATTATAACCAAAGTCACGGTCATAGATTATAGCGGAGTT 496507 >seq7 Length=4380649 Score = 291 bits (322), Expect = 1e-73 Identities = 490/703 (70%), Gaps = 11/703 (2%) Strand=Plus/Plus Query 47975 ATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 48034 ||| || || ||||||||||| ||| || |||||||| || || | || || Sbjct 4094570 ATCAGCCACAAATTCTATATAATCGGACATTGATTTGCAATTCATACCAATTAAATTTAC 4094629 Query 48035 TGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT--CGAT 48092 || | ||| || || | || ||||| || || | ||||| || || || | || Sbjct 4094630 GGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTTTAACAGCTTCGGAAATGATTTCAAT 4094689 Query 48093 GTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATCA 48152 | | ||| | |||||| | | |||||||| |||||| |||||||| |||||| Sbjct 4094690 AATTCG--TTCATTACTTGGCTTCTGTATCAAATGTTGAAACATCAAACATGCGAAATCA 4094747 Query 48153 CAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGT 48212 ||||| ||||| || |||| |||| || || ||||| || | || ||||||| Sbjct 4094748 CAATGCAGACCCTCGTCTCGTGAGATTAGCTCATTGGAAAACGTTAAGCCAGGCATTAAA 4094807 Query 48213 CCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA--GAAAAGAATATGCCTTCTA 48270 ||||||||||| ||||| || || | ||| ||| |||| ||||| |||| ||||| | Sbjct 4094808 CCACGTTTTTTAAGCCAGAAGATCGACGCAAAACTTCCACTGAAAAAAATA--CCTTCCA 4094865 Query 48271 CGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTT-CGTTGTGTA--TCCACCGTT 48327 | || |||||||| | | | || || | | || | ||| | | |||| Sbjct 4094866 CAGCTGCAAATGCAATTACACGTTCACCAAAGTTTGCCGACTTTGAGGAAATCCAAGCAA 4094925 Query 48328 GTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGt 48387 |||||||||| ||||| |||||| |||||| ||||| |||||||| || | | ||| Sbjct 4094926 GTGCCCAATCTGCCTTACGCTTTACGGCAGGCATCGTTTCAATAGCATTGAATAAATAGT 4094985 Query 48388 ttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAA 48447 | ||| || ||| |||| || ||||| ||||| | ||||||||||||||| || | Sbjct 4094986 TCCTTTGTTTCGAATCCTTAATATATGTATCGATTAATATACTATACATTTCGGAATGCA 4095045 Query 48448 TATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCG 48507 || || || || || |||||||| || ||||| | || ||||| | || |||||| Sbjct 4095046 CGTTCTCCATAGCAATTTGAAATCCATAGAAACAACGTGCCTCTGTAACTTGGACCTCCT 4095105 Query 48508 TACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTA 48567 || ||||||||| | ||||||||||| || || |||||| || |||||||| |||| Sbjct 4095106 GACTGAATCGTTCAACTAAATTCTCATTAACAATACCATCAGATGCGGCAAAAAAGGCTA 4095165 Query 48568 ATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTT 48627 |||| ||| || |||| ||| ||| ||| || ||| |||| ||||||| Sbjct 4095166 ATACGTGTGAGATGAAATGCCGTTCATTGTCAGTGAGACGTGCCCAATCATCCATATCTT 4095225 Query 48628 TTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 | || | ||| ||||| ||| |||||||||| || || ||||| Sbjct 4095226 TAGAAAGATCCACTTCCTCAACTGTCCAAAACGACGCTTCTGC 4095268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694620416318080