Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq71 435 4e-117 seq7 311 1e-79 >seq71 Length=1348405 Score = 435 bits (482), Expect = 4e-117 Identities = 1233/1876 (66%), Gaps = 31/1876 (2%) Strand=Plus/Plus Query 75373 CAAC-GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTT 75431 |||| ||||| || || | | | |||||| || || |||| || ||||| || |||| Sbjct 494644 CAACTGTGAATTGTATAGCATTTGCTGCTGGCTTCGTGCGTAAGTAATACATGCCCGTTT 494703 Query 75432 TTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGG 75491 | || || |||| || || || || || || || ||| ||| | || |||| Sbjct 494704 TGAGTCCTGCTTTCCAACCATAAAAGTGTATAGAGGTGAGCTTGCCATAGTTGGGCTCGG 494763 Query 75492 CTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTT 75551 | | || ||||| | ||| || |||||||||||||| || || | ||| || ||||||| Sbjct 494764 CCACGTGTATATTGAACGATTGGCTTTGATCGATGAATGCGCCACGATCTGCAGCCATTT 494823 Query 75552 TTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATAT-CATCT 75610 | || ||| || | ||| ||||||| ||| ||| | | | |||| || Sbjct 494824 TGATGGAGGTTTTCACTGAAATCTCCCAAACAGTCTTGTACAGATCGCGTATATGTTTCG 494883 Query 75611 GGAAGATTT--GTATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCAT 75668 | | | ||| | ||||| || || || | || | |||||| ||||| || || |||| Sbjct 494884 GTATGGTTTCAATGTTTTGTATAGAACCACGATGTGTTATAATGGTATTTTTCATATCAT 494943 Query 75669 CATTCCACAATTTTCTCTCGGTTAAAACTC-TAAGGAGATGAGGATTAACAATTTGAAAT 75727 ||| |||||| |||||| | | | | ||| || ||| |||| |||| ||| ||| Sbjct 494944 CATCCCACAAACCCAACTCGGTGAGATCGCGTAACAAG-TGATGATTGACAACTTGGAAT 495002 Query 75728 TCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTG 75787 || || || | || | || || |||||||| || || ||||| | || ||||| Sbjct 495003 TCACCCGAAAGCACACGACGTGTATAAATATTCGAAGTGTACGGTTCAAACGACTCATTA 495062 Query 75788 TTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTG 75847 || |||| |||||| || || |||||||| ||||| ||||| | ||| || || | Sbjct 495063 TTGCCCATAATTTGTGCGGTAGAAGCAGTTGGCATCGGTGCAAGCAACAATGAGTTGCGT 495122 Query 75848 AGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACA 75907 | ||||||| | ||||| || || | | |||| | ||| ||||| | ||| Sbjct 495123 ACACCATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAGTTCCAGAGATCAGTTGGCGTT 495182 Query 75908 ACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCG 75967 |||||| | || |||||||| || || ||||| | ||| || | |||||| ||| Sbjct 495183 TTATCCCACATGTCATATTGTAGTATACCCTTGCTGACTGGTGAACCTTCATATGTCTCG 495242 Query 75968 TAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTT 76027 ||||| || | |||||||| | ||| ||||| || || || || || || ||||| ||| Sbjct 495243 TAAGTGCCATATTTTTCAGCCAATTCACAACTGGCTTCCAATGCGCCATAGTAAATAGTT 495302 Query 76028 TCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGA 76087 ||||| || | | ||| | | || ||| ||| || | ||| || | | | | Sbjct 495303 TCGAATATTTGTTGATTCAACAAGTATGCCTCATCACTTTCGTATGGAAAACGCATTAAA 495362 Query 76088 ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAA 76147 || || || || || | || || | ||||||||||| || | ||||| | ||| || Sbjct 495363 ATTAAGGCGTCGGCAAAACCTTGTATGCCAATACCAATGGGACGATGTCGCAAATTCGAT 495422 Query 76148 ATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACA 76207 | | || || || | || |||| ||| | ||||| ||||| || | ||| | | Sbjct 495423 TTCTTGGCCTCCGGTAAGGGATAATGATTGACGTCTATGATTTTGTTCAAATTACGCGTA 495482 Query 76208 ACTACTTTAACCACGTCCTTTA---GTTTGAGAAAATCAAATTTTCCATC---TATCACA 76261 || | ||| || || || | |||| ||| ||| | || ||| | | ||| Sbjct 495483 ACAATTTTTGTGACTTCTTTAAGCCGTTT---AAAGTCATACGTTTTATCTGGTGTGACA 495539 Query 76262 AACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATAT 76321 |||| || | ||||| || |||| ||| ||||| |||||||| | | || |||| Sbjct 495540 TACATGTTCAATGCTATTGAGGCTAAATTGCAAACAGCTACCTCGTCGGGTGCGGAATAT 495599 Query 76322 TGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTC 76381 | | || || || || | ||||||||| || || || |||| ||| || || || ||| Sbjct 495600 TCAACAATTTCGGTACACAAATTACTACATTTAATCGTGCCAATATTCTGCTGATTACTC 495659 Query 76382 TTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCG 76441 ||| | || || | || ||||| | | |||| || || || || | ||| ||||| Sbjct 495660 TTTCTATTGCAAGCATCTTTATACAACATGTACGGTGTGCCGGTCTCTACCTGCGATTCA 495719 Query 76442 ATAATAGATTTCCAGACGACTCT-AGCTTTTA--TTATAGATTTGTATCGCTTCTCTCTT 76498 ||||| | ||| | |||| | ||||| | || | ||| | | || ||| | Sbjct 495720 ATAATGGCAAACCA-AAGACTTTGTGCTTTAACCTTCT-TATTAGCA-CGTCCTTCTTGT 495776 Query 76499 TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACAT 76558 ||||||| |||||| || || || || ||||| || |||| ||||| ||||| Sbjct 495777 TCATATTTCTCATATAATTTCTCGAACTCTTCACCCCATACTTCATGTAAACCCGGACAC 495836 Query 76559 TCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCA 76618 | || |||||||| | ||||| || |||| | | || ||| |||||| ||||| Sbjct 495837 TTATGTGGACACATTAGCGACCAGTCTTCATCGGCTTCGACACGTCGCATAAATAGATCC 495896 Query 76619 GGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTT 76678 |||||||| | ||| |||| ||||| | | | | ||||| || || ||||| || Sbjct 495897 GGTATCCACAAGGCATAGAATAAATCTCTTGCGCGATGCTCTTCTTTGCCAGTATTTTTC 495956 Query 76679 TTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACA 76738 || | ||| | ||||| | || || | |||||||||||| ||||| || || | | Sbjct 495957 TTCAAATCCAAAAACTCGAAAACGTCCGCATGCCATGGTTCCAGATAGATGGCAAAGGCG 496016 Query 76739 CCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAAC 76798 || || || ||| || || ||||| | ||| | || |||||| | ||||||| | Sbjct 496017 CCGGGACGCTTACCGCCACCTTGATCAACATAACGTGCCACATTATTAAACACTCTCAGC 496076 Query 76799 ATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGA 76858 ||||| | | || || || || |||||||| || | ||| | | || || || Sbjct 496077 ATTGGCACTAAACCATTGGAAGTGCCATTTGTACCCGCAATTGCAGTGCCTTTCGCGCGT 496136 Query 76859 AT--ATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAG---C 76913 || | | | || | | || || || ||||| ||| ||||| | |||||| Sbjct 496137 ATGCAATGCACATTCAAA--CCAATACCGCCTGCAGATTTGGAGATCAATGCACAGTGAT 496194 Query 76914 GTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGC 76973 || | ||||| | || || || || ||| |||| |||| |||| ||||| || Sbjct 496195 GTGCCGATGTG---AAAATACCGTCAATTGAATCGTCCACCATGGTAAGCAGAAAGCACG 496251 Query 76974 TAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACC 77033 |||| ||| | || || | ||| || | || || || ||||| || || Sbjct 496252 ATGACAATTGCGGTTGCTTGGTGGCAGCAGCGAATAGCGTTGGTGAGGCATGTGTAAAAT 496311 Query 77034 ATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTC 77093 | |||||||| | |||||||||||||| | || || ||||| ||| || | Sbjct 496312 AACGCTCAGAAAGCAAGTTGTATGTTTCAATTGCGGCATCAATATCTTCACCATGTATAC 496371 Query 77094 CTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCA 77153 | | || || ||||| ||||| || || || || || ||| | || ||| | || | Sbjct 496372 CGATGGCAACGCGCATTAACATGTGTTGCGGACGCTCAACAATTTTGCCATTCAACTTGA 496431 Query 77154 ACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGT 77213 ||| || || ||| | ||||||||||||||||| || || |||||| | || | Sbjct 496432 GCAAATACGAACGTTCGAGTGTTTTAAAACCAAAATAATTATAACCAAAGTCACGGTCAT 496491 Query 77214 AAATAATAACCGAATT 77229 | || ||| | || || Sbjct 496492 AGATTATAGCGGAGTT 496507 >seq7 Length=4380649 Score = 311 bits (344), Expect = 1e-79 Identities = 492/701 (70%), Gaps = 7/701 (1%) Strand=Plus/Plus Query 46464 ATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGAC 46523 ||| || || ||||||||||| ||| || |||||||| || || | || || Sbjct 4094570 ATCAGCCACAAATTCTATATAATCGGACATTGATTTGCAATTCATACCAATTAAATTTAC 4094629 Query 46524 CGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATCGATGT 46583 || | ||| || || | || ||||| ||||| | ||||| || || || || | Sbjct 4094630 GGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTTTAACAGCTTCGGAAATGATTTCAAT 4094689 Query 46584 TACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATCACA 46643 | | ||| | |||||| || |||||||||| |||||| |||||||| |||||||| Sbjct 4094690 AATTCGTTCATTACTTGGCTTCTGTATCAAATGTTGAAACATCAAACATGCGAAATCACA 4094749 Query 46644 ATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCC 46703 ||| || || || |||| |||| || || ||||| || | |||||||||| || Sbjct 4094750 ATGCAGACCCTCGTCTCGTGAGATTAGCTCATTGGAAAACGTTAAGCCAGGCATTAAACC 4094809 Query 46704 ACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA--GAAAAGAATATGCCTTCTACA 46761 ||| ||||| ||||| || || | ||| ||| |||| ||||| |||| ||||| ||| Sbjct 4094810 ACGTTTTTTAAGCCAGAAGATCGACGCAAAACTTCCACTGAAAAAAATA--CCTTCCACA 4094867 Query 46762 GCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT--ATGAA-TCCACCTTTGA 46818 || || ||||| | | | || || | | || || | ||| |||| | Sbjct 4094868 GCTGCAAATGCAATTACACGTTCACCAAAGTTTGCCGACTTTGAGGAAATCCAAGCAAGT 4094927 Query 46819 GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 46878 |||||||| ||||| |||||| |||||| ||||| |||||||| || | | |||| Sbjct 4094928 GCCCAATCTGCCTTACGCTTTACGGCAGGCATCGTTTCAATAGCATTGAATAAATAGTTC 4094987 Query 46879 ttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATG 46938 ||| | ||| |||| ||||||||| ||||| | |||||||||||| ||||| | | Sbjct 4094988 CTTTGTTTCGAATCCTTAATATATGTATCGATTAATATACTATACATTTCGGAATGCACG 4095047 Query 46939 TTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTA 46998 || || ||||| || |||||||| || ||||| | ||| || |||| || ||||| | Sbjct 4095048 TTCTCCATAGCAATTTGAAATCCATAGAAACAACGTGCCTCTGTAACTTGGACCTCCTGA 4095107 Query 46999 CAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAAT 47058 | ||||||||| ||||||||||| || || |||||| || |||||||| || ||| Sbjct 4095108 CTGAATCGTTCAACTAAATTCTCATTAACAATACCATCAGATGCGGCAAAAAAGGCTAAT 4095167 Query 47059 ACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTT 47118 || ||| || |||| ||||| | ||| || ||| |||| |||||||| Sbjct 4095168 ACGTGTGAGATGAAATGCCGTTCATTGTCAGTGAGACGTGCCCAATCATCCATATCTTTA 4095227 Query 47119 GATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159 || | ||| ||||| ||| ||||||| || ||||| ||||| Sbjct 4095228 GAAAGATCCACTTCCTCAACTGTCCAAAACGACGCTTCTGC 4095268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712884744119040