Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_031040.1 Length=31987 Score E Sequences producing significant alignments: (Bits) Value seq273 206 5e-49 seq1321 107 4e-19 >seq273 Length=32108 Score = 206 bits (228), Expect = 5e-49 Identities = 320/448 (71%), Gaps = 17/448 (4%) Strand=Plus/Minus Query 6992 TGGCAGATAACAAGAAGTATTACTACATGAGATTAAAAGAAAACTTCTTTGATTCTGATG 7051 ||||||| || || || |||||||| | | | | ||||| || || || ||| ||||| Sbjct 24894 TGGCAGACAATAAAAAATATTACTATCTCAAACTCAAAGATAATTTTTTCGATAGTGATG 24835 Query 7052 AAATGATTATCTTAGAAAACATGGATAACGGAGATGGGATTATTTACAGTAACATCTTAC 7111 |||||||| | |||||| ||| ||||| ||| || || |||||| Sbjct 24834 AAATGATTGTGCTAGAAAGTATGCCC------GATGGTTATATCTATTCCAATATCTTAT 24781 Query 7112 TGAAGCTTTATCTAAGAAGTTTAAAGTATGAAGGACGGTTAATGTTCAATGAAAGAATAC 7171 | || |||||| |||||||||| || |||||||| || ||||||| || ||||| |||| Sbjct 24780 TAAAACTTTATTTAAGAAGTTTGAAATATGAAGGGCGCCTAATGTTTAACGAAAGGATAC 24721 Query 7172 CTTTCAACCCTCAAATGCTTTCTACTATTGTACGT--CATCCAGTCGGTGTAGTTGAAAA 7229 | |||||| | |||||| || || | || ||| ||| || || | || ||||| Sbjct 24720 CATTCAACTCAACAATGCTATC-ACAAGTG-ACGAGGCATAGCGTTGGAGATGTCGAAAA 24663 Query 7230 AGCTCTTAAAGCGTTTGTTGATTTAGGCCTAGTTGAAGTTATGGATAATGGAGCAATTTA 7289 ||| | | | ||| ||||||| || |||| ||| | ||||||||||||||||| Sbjct 24662 AGCAATACAGGTTTTTAGAGATTTAGAGCTCATTGAGGTTTTAGATAATGGAGCAATTTA 24603 Query 7290 TATGCTAGATATTCAAAACTTTATCGGAAAAACAACAACAGAGGCTGATAGGATAAAGGC 7349 |||| ||||||| ||||| ||||| |||||| | ||||||| || ||||| | || || Sbjct 24602 TATGTTAGATATCCAAAATTTTATTGGAAAATCTTCAACAGAAGCAGATAGAAAAAGGGA 24543 Query 7350 TTATCGTTCTAAAATTAATAAAGAAAAAG---GTCTAGTTTC-AAATGAT-ACACAAAAG 7404 |||| | |||| || |||||||||| |||| ||| | |||||| ||||| | Sbjct 24542 TTATAGACAACAAATCAAGAAAGAAAAAGACAGTCT-GTTGCTTAATGATGTGACAAATG 24484 Query 7405 TTAGTACAAATGTAC-GACAAAAGTACA 7431 | | |||||| || | |||||| || || Sbjct 24483 TAACTACAAACGTCCGGACAAATGTCCA 24456 Score = 147 bits (162), Expect = 4e-31 Identities = 172/228 (75%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 24158 ATATTGATTTAGCTGGTGCTGGTCGTGCGATTATTGATGGATTTGTCGGTGGGCTTAAAA 24217 || ||||| || || |||||| | || ||||| || | || | |||||||| Sbjct 4740 ATTTTGATCTATTTGCGGCTGGTAGAGCAATTATGGAAAGTTTCACTGATGGGCTTAC-- 4683 Query 24218 GCA--CATGGGAAGCCG-GAAAGAAATTTGTAGGTGGAATTGCTGATTGGATTAAAGAAC 24274 ||| |||||||||| |||||| ||||| |||| |||| ||||||||| ||||| Sbjct 4682 GCATGCATGGGAAGCGACGAAAGAG-TTTGTCAGTGGTATTGGTGATTGGATACGAGAAC 4624 Query 24275 ATAAAGGACCAATTAGTTATGATAGAAAACTACTAATTCCAGCTGGTGAAGCTATTATGG 24334 ||||||| || |||||||| ||||||||||| |||||||||||||| |||| ||||||| Sbjct 4623 ATAAAGGTCCTATTAGTTACGATAGAAAACTTTTAATTCCAGCTGGTAAAGCGATTATGG 4564 Query 24335 GTGGATTTAATGACAGTTTGATGGAAAACTTTAAAGCTGTTCaaaaaa 24382 |||| || ||||| || || | | |||||| |||| ||||||| Sbjct 4563 GTGGTTTAAATGAAAGCTTACAAGCGAGTTTTAAATCTGTCCAAAAAA 4516 >seq1321 Length=4872 Score = 107 bits (118), Expect = 4e-19 Identities = 233/341 (68%), Gaps = 22/341 (6%) Strand=Plus/Plus Query 29755 ATTATGGATTGCGGCTTATCCAAATTATGAAGTAACACCAGTTCCAAACTATAGCT-TTT 29813 ||||||||| || | |||||| |||||||||| ||||| |||||| || | | ||| Sbjct 2394 ATTATGGATGGCAGAATATCCAGATTATGAAGTGACACCTTATCCAAATTACAATTATTT 2453 Query 29814 TCCCAAGTATGGACGGAATTTCAGTATTC--CAGTTCACATCAACTTATGTTGCTGGCGG 29871 ||| | || | ||| || ||||| |||||||| ||||| || ||||| || || Sbjct 2454 TCCTTCATTTGAA---AATATCGGTATTTTTCAGTTCACGTCAACCTACGTTGCAGGAGG 2510 Query 29872 ACTTGATGGAAATGTTGATTTAACAGGAATCACAGGTAATGGATATGGAAAACAGAAAGG 29931 || ||||| || |||||||||||||| || || | |||||| ||| | | |||| Sbjct 2511 GCTAGATGGTAACGTTGATTTAACAGGTATTACTGATAATGGTTAT---ACAAAGAATAA 2567 Query 29932 CCAAGAAGTTAAACCCAATACTGCTACACCGGCCATTGAAAATGGTAAAGAAGCC--AAT 29989 |||| || ||| | || ||||| || ||||| || || ||| | || Sbjct 2568 CCAACCAG--CAAC---AAAC----ACACCAGCAATTGATGCAGGGGAAAAAGTCGAAAA 2618 Query 29990 GAAGTTAAAGGAAACGATGTAGAAGTTGGAATGACGGTTAAAGTAAACTTTGGCGCTAAG 30049 | | || | |||||| |||| || || |||||||| || ||| ||| | | Sbjct 2619 TACGCCAA--GTTCCGATGTTAAAGTCGGCGATACTGTTAAAGTGAAATTTAGCGTTGAT 2676 Query 30050 AATTATGCCACAGGAGAAACAATTCCTCAATGGGTAAAAGG 30090 || || ||||| ||| | ||||| |||||||||||||| Sbjct 2677 GCTTGGGCTACAGGTGAAGCTATTCCGCAATGGGTAAAAGG 2717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102230035246536