Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_031094.1 Length=33105 Score E Sequences producing significant alignments: (Bits) Value seq884 122 2e-23 seq641 122 2e-23 seq273 109 1e-19 >seq884 Length=19560 Score = 122 bits (134), Expect = 2e-23 Identities = 201/290 (69%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 27389 GTTGGACGTCTAACTAAAGACCCAGAACTTAAATACACACAAAGCAATATCGCAGTAGCA 27448 ||||||||| |||| ||||| ||| | ||||| ||| | ||||| | | Sbjct 820 GTTGGACGTTTAACGAAAGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGGA 879 Query 27449 TCTTTTAGCCTTGCGGTTAACCGTAACTTTAAGGATGCTAATGGTGAGCGTGAAGCAGAT 27508 |||| ||||| || ||||||||||||| | || || || || ||||| ||| Sbjct 880 AGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGAT 939 Query 27509 TTTATCAATTGCGTTATCTGGCGCCAGCAAGCTGAAAATTTGGCTAATTGGGCTAAAAAA 27568 |||||||| || || || ||||| ||| ||||||| ||||||||| || ||| Sbjct 940 TTTATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGTAAA 999 Query 27569 GGCGCATTGATTGGAATTACTGGACGTATTCAGACCCGTAGCTATGAAAACCAACAAGGG 27628 || |||| | ||| || ||| | ||||| || |||| ||||| ||||||||||| Sbjct 1000 GGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAACCAACAAGGC 1059 Query 27629 CAACGAGTGTATGTGACAGAGGTAGTCGCTGAGAACTTCCAAATGCTAGA 27678 ||||| || |||||||| || || || |||| |||||| | |||| Sbjct 1060 CAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGA 1109 >seq641 Length=27874 Score = 122 bits (134), Expect = 2e-23 Identities = 201/290 (69%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 27389 GTTGGACGTCTAACTAAAGACCCAGAACTTAAATACACACAAAGCAATATCGCAGTAGCA 27448 ||||||||| |||| ||||| ||| | ||||| ||| | ||||| | | Sbjct 27055 GTTGGACGTTTAACGAAAGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGGA 26996 Query 27449 TCTTTTAGCCTTGCGGTTAACCGTAACTTTAAGGATGCTAATGGTGAGCGTGAAGCAGAT 27508 |||| ||||| || ||||||||||||| | || || || || ||||| ||| Sbjct 26995 AGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGAT 26936 Query 27509 TTTATCAATTGCGTTATCTGGCGCCAGCAAGCTGAAAATTTGGCTAATTGGGCTAAAAAA 27568 |||||||| || || || ||||| ||| ||||||| ||||||||| || ||| Sbjct 26935 TTTATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGTAAA 26876 Query 27569 GGCGCATTGATTGGAATTACTGGACGTATTCAGACCCGTAGCTATGAAAACCAACAAGGG 27628 || |||| | ||| || ||| | ||||| || |||| ||||| ||||||||||| Sbjct 26875 GGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAACCAACAAGGC 26816 Query 27629 CAACGAGTGTATGTGACAGAGGTAGTCGCTGAGAACTTCCAAATGCTAGA 27678 ||||| || |||||||| || || || |||| |||||| | |||| Sbjct 26815 CAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGA 26766 >seq273 Length=32108 Score = 109 bits (120), Expect = 1e-19 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 11281 TTTATAAGTGGAATTGGAGATTGGATTCGGAAGCATAAAGGTCCAATTCGTGTCGACAGA 11340 ||| | ||||| ||||| |||||||| || | ||||||||||| ||| || ||| ||| Sbjct 4657 TTTGTCAGTGGTATTGGTGATTGGATACGAGAACATAAAGGTCCTATTAGTTACGATAGA 4598 Query 11341 AAACTTTTAATTCCCGCTGGTAATGCCATTATGAATGGTTTAAAT 11385 |||||||||||||| |||||||| || |||||| |||||||||| Sbjct 4597 AAACTTTTAATTCCAGCTGGTAAAGCGATTATGGGTGGTTTAAAT 4553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 105807398525688