Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_031101.1 Length=33697 Score E Sequences producing significant alignments: (Bits) Value seq884 89.7 1e-13 seq641 89.7 1e-13 >seq884 Length=19560 Score = 89.7 bits (98), Expect = 1e-13 Identities = 116/159 (73%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 18158 TTTCACCAGACTTTCGCCAAATAACAAAATTGATAAAGTCAGCTTCTCGTTCTCCATTTG 18217 ||||| ||| ||| |||||||| ||| | |||||||| || ||||||||||| || ||| Sbjct 976 TTTCAGCAGGCTTACGCCAAATTACACAGTTGATAAAATCCGCTTCTCGTTCGCCGTTTT 917 Query 18218 CATTAGTAAAGTTTCGGTTCACTGCAATAGTGCCAGAG---GCAACAGCCGTTCCTGACG 18274 || |||||||| |||||||| |||| ||| | || |||| || | || | Sbjct 916 GGTTTGTAAAGTTACGGTTCACAGCAAGAGT---AAAGCTTCCAACTGCAGAACCACTTG 860 Query 18275 TTGTGTAACGTAATTCTACTTCCTTAGTCAATCGTCCAA 18313 ||||| ||||| |||| || || || || ||||||| Sbjct 859 CGGTGTAGCGTAAATCTATATCTTTCGTTAAACGTCCAA 821 >seq641 Length=27874 Score = 89.7 bits (98), Expect = 1e-13 Identities = 116/159 (73%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 18158 TTTCACCAGACTTTCGCCAAATAACAAAATTGATAAAGTCAGCTTCTCGTTCTCCATTTG 18217 ||||| ||| ||| |||||||| ||| | |||||||| || ||||||||||| || ||| Sbjct 26899 TTTCAGCAGGCTTACGCCAAATTACACAGTTGATAAAATCCGCTTCTCGTTCGCCGTTTT 26958 Query 18218 CATTAGTAAAGTTTCGGTTCACTGCAATAGTGCCAGAG---GCAACAGCCGTTCCTGACG 18274 || |||||||| |||||||| |||| ||| | || |||| || | || | Sbjct 26959 GGTTTGTAAAGTTACGGTTCACAGCAAGAGT---AAAGCTTCCAACTGCAGAACCACTTG 27015 Query 18275 TTGTGTAACGTAATTCTACTTCCTTAGTCAATCGTCCAA 18313 ||||| ||||| |||| || || || || ||||||| Sbjct 27016 CGGTGTAGCGTAAATCTATATCTTTCGTTAAACGTCCAA 27054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107701673177976