Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_031241.1 Length=43293 Score E Sequences producing significant alignments: (Bits) Value seq884 484 2e-132 >seq884 Length=19560 Score = 484 bits (536), Expect = 2e-132 Identities = 914/1338 (68%), Gaps = 36/1338 (3%) Strand=Plus/Plus Query 575 AGAACTAAAGCAGCAGAGTTATTAGGTAAGCGATATATGATGTGGACAGACAAACAACAA 634 || ||||||||||| || ||| | ||||| || || | ||| || |||||||||||| Sbjct 7227 AGGACTAAAGCAGCGGAATTACTTGGTAAACGTCATGCGCTGTTCACTGACAAACAACAA 7286 Query 635 ATCGAAACAACTGCGACGGTACAGTTCAATGACGATATCGATTA---------------- 678 || ||| |||| | | | || ||| ||||||| | | Sbjct 7287 ATAGAAGTTACTGAAATGCCAGTATTTGTTGATGATATCGGTGATGATGATGGTTAAGAA 7346 Query 679 --ATCTATCCGAACTGTTACCTAAACACTTTCATAGCTTGTGGAAAGCGACTAAAGATAG 736 | ||||| ||| | ||||| ||| | |||||| | |||| ||| ||| || Sbjct 7347 AAAACTATCAGAATTATTACCGAAAAAATTTCATTCGGTATGGAGAGCCACTCTTAATTC 7406 Query 737 AGAGAAGCTTAACATAGTAGCTAAAGGTGGACGTGGTAGTGGTAAGTCCTCTGATATATC 796 || | || || || || ||| |||||||||||| |||||| || || ||||| | Sbjct 7407 GGACATACTCAATATTGTTTGTAAGGGTGGACGTGGTTCTGGTAAATCATCAGATATCGC 7466 Query 797 TATTATCATTACACAGTTAATCATGCGTTATCCTATGAATGCAGTTGTAGTACGTAAGAC 856 ||| ||||| || ||| | ||| | ||| || | ||||| |||| | || | Sbjct 7467 ACATATTATTACTCAATTACTTATGAGGTATGCTGTCAATGCGGTTGGCATTCGATATGT 7526 Query 857 AGACAATACATTAGCTACATCAGTATTTGAGCAAATTAAGTGGGCGATAGAAGAACAAAA 916 || |||||||||| |||| | | ||||||||| || ||||| || ||| | ||| Sbjct 7527 TGATAATACATTAGAACAATCAATCTATGAGCAAATGAAATGGGCAATTGAACAGCAAGG 7586 Query 917 GGTGTCGCACCTGTTCAAAGTTAAAGTGTCGCCAATGGAAATCACGTATGTTCCTAGAGG 976 ||| |||| || || ||| |||| ||||| || |||||| || | ||| | || Sbjct 7587 GGTAACGCATCTATTTAAATTTAATAAATCGCCGTTGAGAATCACATACATACCTCGTGG 7646 Query 977 GAATCGGATTATCTTTAGAGGGGCGCAGAACCCTGAGCGATTAAAGTCGTTAAAAGATAG 1036 ||| || || || ||||| || || || ||||| || | ||||| ||||||||||| Sbjct 7647 TAATTATATGATTTTCAGAGGTGCCCAAAATCCTGAAAGAATCAAGTCTTTAAAAGATAG 7706 Query 1037 TCGGTTCCCTTTTTCTATCATGTGGATAGAGGAGTTGGCAGAATTTAAGACAGAAGATGA 1096 ||||||||| ||| | || ||||| |||||||| | || ||||| || |||||||| Sbjct 7707 TCGGTTCCCGTTTGCGATTGGCTGGATTGAGGAGTTAGGCGAGTTTAAAACTGAAGATGA 7766 Query 1097 AGTCACAACAATTACTAACTCTATGTTACGTGGAGAACTAGACGACGGGTTATTTTACAA 1156 ||| || || ||||| || || | |||||||| ||| ||| | || | ||||| || Sbjct 7767 AGTAACGACCATTACCAATTCACTTTTACGTGGTGAATTAGGAAATGGTCTTTTTTATAA 7826 Query 1157 GTTTTTCTTTAGTTACAACCCACCTAAGAGAAAACAATCGTGGGTTAACAAAAAATACGA 1216 || || || || |||||||| || || | |||||| ||||| ||||| ||||| || Sbjct 7827 ATTCTTTTTCAGCTACAACCCGCCAAAACGTCGACAATCTTGGGTGAACAAGAAATATGA 7886 Query 1217 AACCTCATTCCAACCGGATAATACGTTTGTACATCATTCAACGTACTTAGATAATCCTTT 1276 | | |||||||| |||||||| ||||| ||||| || || || |||||||||||| Sbjct 7887 ATCTAGTTTCCAACCTGATAATACATTTGTTCATCACTCTACTTATAAAGATAATCCTTT 7946 Query 1277 TATATCTAAACAATTCATACAAGAGGCAGAGAGTGCTAAAGAACGTAACGAACAACGTTA 1336 ||| || | | ||||| | |||| | ||| || | ||| | || ||| Sbjct 7947 TATTTCGAGAGAATTCTTGAAAGAAGTGGAGGCAGCAAGAGATAGAAATCCTTTTCGTGC 8006 Query 1337 TCGTTGGGAATATATGGGTGAAGCTATCGGTAGTGGCGTTGTGCCGTTTAACAACTTGCA 1396 | | |||||||| |||||||| |||||| ||| || || || || | ||||| | Sbjct 8007 TAGATGGGAATACGATGGTGAAGCAATCGGTTCTGGAGTCGTTCCATTCAGTAACTTAAA 8066 Query 1397 AATAGAGAA------GATACCTGATGACTT--ATACAAGACATTCGATAATATACGTAAT 1448 | | ||||| ||| ||||||| | | | | || || |||||||| | || Sbjct 8067 AGTGGAGAAAGGCTGTATAACTGATGAAATGGTTGCTA-AC-TTTGATAATATCAGAAAC 8124 Query 1449 GCAGTTGACTTTGGTTATGCTACTGATCCACTAGCATTTGTACGTTGGCACTATGATAAG 1508 | ||||||| |||||||||||||||||| ||||||| ||||| |||||||| |||||| Sbjct 8125 GGTCTTGACTTCGGTTATGCTACTGATCCATTAGCATTCGTACGATGGCACTACGATAAG 8184 Query 1509 AAGAAACGTATTATCTACGCAGTTGATGAACACTATGGTGTACAAATAAGCAATAGAGAG 1568 || || | ||||| || ||||||||| |||||| || |||| || ||| | ||| Sbjct 8185 AAAAAGAATGGCATCTATGCTGTTGATGAAATCTATGGAGTGAAAATCAGTAATCGTGAG 8244 Query 1569 TTTG-CTAACTGGTTAAAACGTAGAGGTTATCAATCTGATGAGATATACGCAGATAGCGC 1627 |||| | || || ||| | | ||||||||| |||||| || | ||| || Sbjct 8245 TTTGCCCAAAAGGCGAAAGC-AAAAGGTTATCAGTCTGATCGTATTGCATCGGATTCAGC 8303 Query 1628 TGAACCGAAGTCTATTGCAGAGCTGAAACAAGAACACGGTATCAAGAGAATTA-AAGGTG 1686 ||||| || || || ||||| |||| | |||||||| || || | || || | Sbjct 8304 AGAACCTAAATCCATAGCAGAATTGAACAATGAACACGGAAT-GAGCCACGTATTTGGGG 8362 Query 1687 TGAAAAAAGGTCCTGA--CAGTGCAGAACACGGGGAACAATGGCTTGATGATTTAACTGC 1744 | |||||||| || || | |||||| | || || ||||| | |||||||| | Sbjct 8363 TTAAAAAAGGCCCCGACTCTGTGCAG--TATGGCGAGGAATGGTTGGATGATTTGGATTT 8420 Query 1745 TATTGTGATAGATCCTAACAGAACGCCTAATATAGCGAGAGAATTTGAGAATATCGACTA 1804 |||| || || || ||||| || |||||||| | ||| ||||| || || || || Sbjct 8421 TATTTGTATCGACCCACTAAGAACTCCAAATATAGCCAAAGAGTTTGAAAACATTGATTA 8480 Query 1805 TGAAACTGACAAAGACGGCAACGTCAAACCGAGATTAGAAGATAAAGACAACCATACGAT 1864 | | || || ||||| ||||| || || || | ||||||||||| ||||| || || Sbjct 8481 TCAGACGGATAAAGATGGCAATCCTAAGCCAAGGCTTGAAGATAAAGATAACCACACAAT 8540 Query 1865 AGACGCCACTAGATACGC 1882 || || || |||||||| Sbjct 8541 CGATGCAACAAGATACGC 8558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138406841359320