Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq10 109 1e-18 seq48 100 7e-16 >seq10 Length=3877145 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| |||||||| || |||||||||||||||| || || | || ||| Sbjct 2844573 AGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAAGGTACGTCCGTCT 2844514 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| ||||| ||||| | | || || || | | ||||||||| || || Sbjct 2844513 TCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCC 2844454 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || ||| ||| | || | | || || || || || ||||| || || Sbjct 2844453 TGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTC 2844394 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || | ||||||||||||| |||||||| Sbjct 2844393 TTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 2844359 Score = 102 bits (112), Expect = 2e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 |||||| || || || ||||||||||||||||||| ||||| | || || || | Sbjct 2845477 ATGAAGGGTTGATTCCTTTTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCCAATTG 2845418 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| ||||| ||||| | | || || || | | |||||| ||||| ||||| || || Sbjct 2845417 TTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTATCTTGGATCTT 2845358 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 || || | || | | |||| || || || || | |||||||||||| || || Sbjct 2845357 AGCCTTAACGTTTTCGATGGTGTCGGATGGTTCGACCTCCAAAGTAATAGTTTTACCAGT 2845298 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 || ||||||||||||| ||||| Sbjct 2845297 AAGGGTCTTCACGAAGATTTGCAT 2845274 >seq48 Length=1730007 Score = 100 bits (110), Expect = 7e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| || || ||||| |||||||||||||| |||| || || | |||||||| | Sbjct 776875 ATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCCAATTG 776816 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| ||||||||||| | | ||| || || | | ||| || || || ||||||||||| Sbjct 776815 TTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATACCCTCTTTGTCTTGAATTTT 776756 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||||||| | || | | |||| || ||| || || | || || || || || || Sbjct 776755 AGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCTAAGGTGATGGTCTTACCAGT 776696 Query 152081 GAGAGTCTTCACGAAGACCTGCATT 152105 | || || ||||| | ||||||| Sbjct 776695 TAATGTTTTGACGAAAATCTGCATT 776671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153738427290812