Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_031915.1 Length=37395 Score E Sequences producing significant alignments: (Bits) Value seq884 118 3e-22 seq641 118 3e-22 >seq884 Length=19560 Score = 118 bits (130), Expect = 3e-22 Identities = 211/303 (70%), Gaps = 4/303 (1%) Strand=Plus/Minus Query 28915 AACAACTTCTGTGACATAAACACGTTGACCTTGCTGGTTATCATAGCTACGTGTTTGAAT 28974 ||||||||| || ||||| |||||||| ||||| ||||| ||||| |||| |||||||| Sbjct 1086 AACAACTTCAGTCACATAGACACGTTGGCCTTGTTGGTTGTCATAATTACGAGTTTGAAT 1027 Query 28975 TACTCCTGTAACTCCGATAAGAGAGCCTTTTTTAGCCCAATTAACAAGATTTTCAGCTGA 29034 | || |||||| | | | ||||| || ||||| | | ||||||| | Sbjct 1026 TCTGCCAACAACTCCTAATAATGTTCCTTTACGAGTATAATTAGCCATTGTTTCAGCAGG 967 Query 29035 CTGTCTCCAGATAACGCAATTGATAAAATCAGCCTCACGCTCTCCAGCCTCGTTCTTAAA 29094 || | ||| || || || ||||||||||| || || || || || | ||| |||| Sbjct 966 CTTACGCCAAATTACACAGTTGATAAAATCCGCTTCTCGTTCGCCGTTTTGGTTTGTAAA 907 Query 29095 TGGACGGTTTACAGCAAGAGTAAACGTAGCAACCGCAATATTAGATTGC-GTGTATCTCA 29153 |||||| |||||||||||||| | |||| ||| | | |||| ||||| | | Sbjct 906 GTTACGGTTCACAGCAAGAGTAAAGCTTCCAACTGCAGAACCA-CTTGCGGTGTAGCGTA 848 Query 29154 GTTCGGCATCTCTTGTAAGTCGCCCTACTAAAACAACGTTATTTATCATTTTG-CAC-CT 29211 || |||| | || | || || ||||| ||||| | |||||||| ||| ||| || Sbjct 847 AATCTATATCTTTCGTTAAACGTCCAACTAACACAACTTGGTTTATCATATTGTCACTCT 788 Query 29212 CCT 29214 ||| Sbjct 787 CCT 785 >seq641 Length=27874 Score = 118 bits (130), Expect = 3e-22 Identities = 211/303 (70%), Gaps = 4/303 (1%) Strand=Plus/Plus Query 28915 AACAACTTCTGTGACATAAACACGTTGACCTTGCTGGTTATCATAGCTACGTGTTTGAAT 28974 ||||||||| || ||||| |||||||| ||||| ||||| ||||| |||| |||||||| Sbjct 26789 AACAACTTCAGTCACATAGACACGTTGGCCTTGTTGGTTGTCATAATTACGAGTTTGAAT 26848 Query 28975 TACTCCTGTAACTCCGATAAGAGAGCCTTTTTTAGCCCAATTAACAAGATTTTCAGCTGA 29034 | || |||||| | | | ||||| || ||||| | | ||||||| | Sbjct 26849 TCTGCCAACAACTCCTAATAATGTTCCTTTACGAGTATAATTAGCCATTGTTTCAGCAGG 26908 Query 29035 CTGTCTCCAGATAACGCAATTGATAAAATCAGCCTCACGCTCTCCAGCCTCGTTCTTAAA 29094 || | ||| || || || ||||||||||| || || || || || | ||| |||| Sbjct 26909 CTTACGCCAAATTACACAGTTGATAAAATCCGCTTCTCGTTCGCCGTTTTGGTTTGTAAA 26968 Query 29095 TGGACGGTTTACAGCAAGAGTAAACGTAGCAACCGCAATATTAGATTGC-GTGTATCTCA 29153 |||||| |||||||||||||| | |||| ||| | | |||| ||||| | | Sbjct 26969 GTTACGGTTCACAGCAAGAGTAAAGCTTCCAACTGCAGAACCA-CTTGCGGTGTAGCGTA 27027 Query 29154 GTTCGGCATCTCTTGTAAGTCGCCCTACTAAAACAACGTTATTTATCATTTTG-CAC-CT 29211 || |||| | || | || || ||||| ||||| | |||||||| ||| ||| || Sbjct 27028 AATCTATATCTTTCGTTAAACGTCCAACTAACACAACTTGGTTTATCATATTGTCACTCT 27087 Query 29212 CCT 29214 ||| Sbjct 27088 CCT 27090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119534490178248