Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq10 138 8e-28 seq48 91.5 1e-13 >seq10 Length=3877145 Score = 138 bits (152), Expect = 8e-28 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | ||| |||| ||||| || ||||||||||||||||| Sbjct 2845507 TTGCATGCCACCACGGAGACGCAATACCAAATGAAGGGTTGATTCCTTTTGGATGTTGTA 2845448 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| | || |||| |||| || || ||||||||||||||||| || ||||| Sbjct 2845447 ATCGGACAAAGTACGTCCGTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATC 2845388 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | || ||||| || ||||| ||| | || | |||||||||| | Sbjct 2845387 TGGTGGGATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTTTCGATGGTGTCGGATGG 2845328 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||||| ||||| || || || || ||||||||||||||||||||||| Sbjct 2845327 TTCGACCTCCAAAGTAATAGTTTTACCAGTAAGGGTCTTCACGAAGATTTGCAT 2845274 Score = 127 bits (140), Expect = 1e-24 Identities = 158/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 |||| ||||| || |||||| |||||||||||||||| | || | || |||| || Sbjct 2844570 ACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAAGGTA-CGTCCGTCTTC 2844512 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||| || || ||||||||||| ||||| || ||||||| || | ||||| || ||| Sbjct 2844511 CAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCCTG 2844452 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| |||| || || | || || |||| | ||| ||||||| || || |||| Sbjct 2844451 AATCTTA-GCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCT 2844393 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | ||||||||||||||||||||| Sbjct 2844392 TGCCAGTCAAGGTCTTCACGAAGATTTGCAT 2844362 Score = 120 bits (132), Expect = 2e-22 Identities = 169/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | ||| |||| |||||| || |||||||||||||||||| Sbjct 2845051 TTGCATACCACCACGGAGACGCAATACCAAGTGAAGTGTTGACTCCTTTTGGATGTTGTA 2844992 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| | | ||| |||| |||| ||||| || || || || ||||| || ||||| Sbjct 2844991 GTCGGACAATGTGCGTCCGTCCTCCAATTGCTTGCCAGCGAAAATTAAACGTTGTTGATC 2844932 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG-TTCCTATGGTGTCGGCGG 44282 || || | ||| | |||| | | | || ||||| || | || | || || || | | Sbjct 2844931 TGGGGGAATACCCT-CTTTGTCTTGAATTTTTGCTTTAACGTTTTCGATTGTATCAGAAG 2844873 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||||| ||||| || |||||||| | || || |||||||||||||| Sbjct 2844872 GTTCAACCTCCAGAGTAATTGTTTTTCCCGTCAATGTTTTAACGAAGATTTGCAT 2844818 Score = 102 bits (112), Expect = 6e-17 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | ||| |||| ||||| || ||||||||||| ||||| Sbjct 2845279 TTGCATACCACCACGGAGACGCAATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTA 2845220 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | || ||| |||| |||| || || ||||||||||||||||| || ||||| Sbjct 2845219 GTCCGACAGGGTGCGTCCGTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATC 2845160 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || || | || ||||| || || || || | || ||| | || || |||| | Sbjct 2845159 TGGTGGAATGCCCTCCTTATCTTGGAT-TTTGGCCTTAACATTCTCAATAGTATCGGAAG 2845101 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| || || || || || || ||||||||||| ||||||||||| Sbjct 2845100 GCTCAACTTCCAAGGTTATGGTTTTACCGGTCAGGGTCTTCACAAAGATTTGCAT 2845046 >seq48 Length=1730007 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGT 44183 |||||||| || || || |||||||||||||||||| |||| | || || || | | Sbjct 776884 CAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTG-CGACCAT 776826 Query 44184 CGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTT 44243 | |||| || || ||||| |||||||||||||| ||||||| || | ||| || || | Sbjct 776825 CTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATACCCTCTTTGT 776766 Query 44244 CCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 | || || || | || | |||||||| | | || ||||| | || || | Sbjct 776765 CTTGAATTTTAGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCTAAGGTGATGG 776706 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || | || || ||||| || ||||| Sbjct 776705 TCTTACCAGTTAATGTTTTGACGAAAATCTGCAT 776672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359965953501924