Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq45 140 4e-28 seq11 104 3e-17 >seq45 Length=1794600 Score = 140 bits (154), Expect = 4e-28 Identities = 234/337 (69%), Gaps = 6/337 (2%) Strand=Plus/Plus Query 50473 AAGGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAA 50532 |||| ||| |||| || |||||||||||||||||| | |||||||| || |||| | Sbjct 1449464 AAGGTGATCTAGGTCCAGTTTACGGTTTTCAATGGCGTCATTTTGGGGCCAAGTACAGGA 1449523 Query 50533 ATTGCGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGACGT 50592 ||||| | | | |||| ||||| | || ||||||||||| || || | || | || Sbjct 1449524 ATTGCAAAGACAGTTACAAAGGTGAGGGAGTGGATCAACTTCAGGAAGTGATTAACACAA 1449583 Query 50593 TGAAAACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATATAG 50652 | | || || || | ||||| |||||| ||||| | || |||||||| ||||||| Sbjct 1449584 TCAGAAACAATCCAAATGATCGACGTATTATAATGTCTGCGTGGAATCCTGTCGATATAC 1449643 Query 50653 ATCAAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATGCCACAGACAAT---G 50709 ||||| | | | || || |||||| | | ||||||| || | |||| | Sbjct 1449644 CTCAAATGGCTCTGCCCCCTTGTCATTGTCTTGCACAATTTTTTG---TTGCCAATGGAG 1449700 Query 50710 TTTTATCCTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACG 50769 || || ||||||| || ||| | ||||| ||||| ||||| || || ||||| Sbjct 1449701 AGTTGTCTTGTCAATTATACCAACGTAGTGCTGACATGGGATTAGGTGTACCATTCAATA 1449760 Query 50770 TAGCTTCTTACGCTTTATTAACGTATTTGATCGCTCA 50806 | || || ||||| || | || ||| |||| ||||| Sbjct 1449761 TTGCATCATACGCGTTGCTTACCTATATGATTGCTCA 1449797 >seq11 Length=3914683 Score = 104 bits (114), Expect = 3e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 155871 TTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTCAATTCCAAC 155930 |||| |||||| | ||| |||| ||| | ||| || | || || || | || || || Sbjct 430936 TTTAGAATTTGCACACGTCCCTCTTCGTTGGGCAAACTGATCTCCATTTGCACCTCTAAG 430995 Query 155931 CGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATT 155990 || || |||| |||| ||||||||||| | ||| ||||||| ||||| || || | Sbjct 430996 CGACCGGGTCGCAATAGAGCTTCGTCAATCATGTCACGTCTGTTTGTCATGCCGATCACC 431055 Query 155991 AAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTGACTACGGCG 156050 || |||||||| || ||| ||||| || ||||| | | ||||||||||| || | | Sbjct 431056 AATATGTTGTTCAACTGTTCGACACCATCAATTTTGGCGAGCAATTGATTGACCACTGTG 431115 Query 156051 TCGTG 156055 ||||| Sbjct 431116 TCGTG 431120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667028738212320