Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq10 143 6e-29 seq48 140 8e-28 seq558 91.5 4e-13 >seq10 Length=3877145 Score = 143 bits (158), Expect = 6e-29 Identities = 164/217 (76%), Gaps = 5/217 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| |||||||| || | || || || || ||||| || ||||| ||| Sbjct 2844359 AAAATGC---AAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAA 2844415 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || || || || ||| |||||||||||||||||||||||||| || Sbjct 2844416 CCATCCGATACTATTGAAAATGTTAAAGCTAAGATTCAGGACAAAGAAGGAATCCCCCCA 2844475 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGA 178093 || || ||||| | ||||| ||||| ||||| || ||||| ||| | || |||| |||| Sbjct 2844476 GATCAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGTAC-CTTGTCCGA 2844534 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 ||| ||| |||| || || || ||||| ||| | ||| Sbjct 2844535 TTACAACATCCAGAAGGAGTCTACACTTCATTTGGTT 2844571 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || || || || ||||| || || | ||||| ||| || ||| Sbjct 2845277 CAAATCTTCGTGAAGACCCTTACTGGTAAAACTATTACTTTGGAGGTCGAACCATCCGAC 2845336 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| || || || || |||||||| || || || ||| Sbjct 2845337 ACCATCGAAAACGTTAAGGCTAAGATCCAAGATAAGGAGGGAATCCCACCAGATCAACAA 2845396 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| ||||| | || || ||| | ||| | ||||||| ||| || Sbjct 2845397 CGTTTGATCTTTGCCGGTAAACAATTGGAGGACGGACGTACTTTGTCCGATTACAACATC 2845456 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||| |||||||| || ||| | || ||| | ||| Sbjct 2845457 CAAAAGGAATCAACCCTTCATTTGGTATTGCGTCTC 2845492 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| |||||| | || |||||||| ||||| | ||||| || || || Sbjct 2844593 CAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCCGAT 2844652 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| |||||| || ||||| || || ||||||||||| || || || ||| Sbjct 2844653 ACTATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAACAA 2844712 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || |||||| | || |||||| | || || |||| ||||| | Sbjct 2844713 CGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAATATT 2844772 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || ||||| ||| | ||| | ||| Sbjct 2844773 CAGAAGGAATCCACATTACATTTAGTT 2844799 >seq48 Length=1730007 Score = 140 bits (154), Expect = 8e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| | || || || || |||||| | ||||| || || ||| Sbjct 776675 CAGATTTTCGTCAAAACATTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCATCTGAC 776734 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| || ||||| |||||||| || ||||| || || || || Sbjct 776735 ACCATCGAAAATGTCAAAGCTAAAATTCAAGACAAAGAGGGTATCCCACCAGATCAACAG 776794 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||||||||||||||| | |||||||| | || |||| |||| || ||| | Sbjct 776795 CGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGCAC-CTTGTCCGACTACAACAT 776853 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 |||||| || ||||| || ||| | || ||| Sbjct 776854 CCAAAAGGAGTCAACCCTCCATTTGGTGTTG 776884 >seq558 Length=79715 Score = 91.5 bits (100), Expect = 4e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| || || || ||||| ||||| || ||||| ||| || || Sbjct 66185 CAAATTTTCGTAAAAACCCTTACGGGTAAAACCATCACTCTTGAGGTTGAACCTTCGGAT 66244 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| | || ||| || || || || || ||||| || || || || || || Sbjct 66245 ACTATCGAACATGTTAAAGCCAAAATCCAAGATAAGGAAGGGATTCCACCAGATCAACAG 66304 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||||||||| | || ||||| | || | || || || ||| | Sbjct 66305 CGTTTAATTTTTGCCGGAAAACAATTGGAGGATGGTCGCACATTGGCAGACTACAACATT 66364 Query 178104 CAAAAAGAATCAACA 178118 || || || || ||| Sbjct 66365 CAGAAGGAGTCTACA 66379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203645264124968