Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq10 102 8e-17 seq48 98.7 9e-16 >seq10 Length=3877145 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||| |||| || | ||| | ||| ||||||||||| ||||||||||| Sbjct 2844816 CCACCACGTAAGCGTAGAACTAAATGTAATGTGGATTCCTTCTGAATATTATAGTCGGAC 2844757 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || | ||| ||||| ||||| |||| || ||||| || | || Sbjct 2844756 AGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGG 2844697 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 | | ||||| | | ||| |||| |||| || | | ||| ||| | ||| || Sbjct 2844696 ATTCCTTCCTTAT-CTTGAATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAAC 2844638 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || ||||| ||||||| || || |||||||||||||| Sbjct 2844637 CTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 2844590 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| ||||| ||||||| ||||| ||| || || |||||||| || || ||||||| Sbjct 2847115 CGCCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGG 2847056 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 | | || || | || || ||||||||||||||||| |||| |||||||| || | | Sbjct 2847055 ACAAAGTACGTCCATCCTCAAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGATCTGGTG 2846996 Query 41754 GAACGCTCTCCTTGTC 41769 ||| | |||||| || Sbjct 2846995 GAATACCCTCCTTATC 2846980 >seq48 Length=1730007 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||||| ||| || || |||||| || ||||| |||||||| Sbjct 776898 CCACCACGAAGACGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAC 776839 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || || | || || |||||||| |||| |||||||| || | || Sbjct 776838 AAGGTGCGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGG 776779 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| ||||| ||| |||| |||| || | | ||||| | ||| || Sbjct 776778 ATACCCTCTTTGTCT-TGAATTTTAGCTTTGACATTTTCGATGGTGTCAGATGGCTCGAC 776720 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || ||||| || | || || |||||||||||||| Sbjct 776719 CTCTAAGGTGATGGTCTTACCAGTTAATGTTTTGACGAAAATCTGCAT 776672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462271800526400