Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq124 116 3e-21 >seq124 Length=507148 Score = 116 bits (128), Expect = 3e-21 Identities = 240/352 (68%), Gaps = 4/352 (1%) Strand=Plus/Plus Query 18786 ACGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAA 18845 || || |||||||| || | || || || |||||| | |||||||| || |||| | Sbjct 494398 ACAGGAGACCTTGGTCCTGTGTATGGATTTCAGTGGCGTCATTTTGGGGCCAAATACATG 494457 Query 18846 GACTGTCAAT-CAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATAC 18904 ||| | ||| | |||||| ||||| | ||||| |||| || || | || Sbjct 494458 GACA-TGAATACTGACTATTCTGGTCAAGGTGTTGATCAATTGCAGCAAGTAATCAACAC 494516 Query 18905 AATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATAT 18964 | | ||| | || ||| | || || ||||| || | || |||||| | | ||||| Sbjct 494517 ACTGAAATCTAAACCATATGATCGTCGCATGATCATGTGTTCATGGAATGCCATTGATAT 494576 Query 18965 CCCCTTAATGGTACTACCTCCATGTCACA-CGTTATGTCAGTTTTACGTTGCAAACGGTG 19023 || ||||| || || ||||||||| | || | ||| || || ||||| | | || Sbjct 494577 ACCAAAAATGGCTCTTCCACCATGTCACTGCCTTGT-TCAATTCTATGTTGCTGAAGATG 494635 Query 19024 AATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACA 19083 || | | |||||| | || ||| | || | || ||||||||||| ||||| || |||| Sbjct 494636 AACTGTACTGCCAGCTGTATCAGCGTTCAGCAGACATGGGCCTTGGAGTACCATTTAACA 494695 Query 19084 TTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 ||||| | |||||| | | || ||||| || || | |||||||| || || Sbjct 494696 TTGCTAGTTATGCATTGTTAACATACATGGTTGCAAAGGTTACAGGTCTAAA 494747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399349839146790