Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq513 123 3e-23 seq95 120 4e-22 >seq513 Length=652068 Score = 123 bits (136), Expect = 3e-23 Identities = 167/230 (73%), Gaps = 7/230 (3%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 ||||||||| ||| | ||| ||| || ||||| |||||||| || || ||||| | Sbjct 206546 CCTCGTCTCGTGAAATAAGTTCATTGCTGAAGGTGAGACCGGGCATAAGTCCCCGCTTCT 206605 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||| || || | ||||| |||||| ||||| || ||||| ||||| ||||| | Sbjct 206606 TTAACCAGAAGATAGCAGCAAAACTTCCAGAGAAGAAGATACCTTCCACTGCAGCAAACG 206665 Query 24277 CAATAAGTCTTTCTCCATAACCGGCGCTGT--CATG---TATCCACTTTTGAGCCCAATC 24331 ||| | ||| || ||| | || ||| || | || |||||||| | |||||||| Sbjct 206666 CAACCACTCTCTCACCAAA--CGTCGCAGTTTCGTGCGCTATCCACTGAAGGGCCCAATC 206723 Query 24332 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGT 24381 ||||||||||| ||||| ||||| ||||| | || ||||| | |||| Sbjct 206724 TGCCTTCTTTTTCACACACGGCATCGTCTCAACGGCGTTAAATAAGTAGT 206773 Score = 122 bits (134), Expect = 1e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 24405 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 24464 || ||||||||||| | ||||||||||| ||||| | ||||| || || || ||||| Sbjct 207377 TAGGTATCAATCAACAAGCTATACATTTCTGAATGGACATTTTCCATCGCTATCTGAAAG 207436 Query 24465 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTT 24524 || ||||| ||||| || || || | |||||||| | |||| ||| | ||||| Sbjct 207437 CCATAGAAGCATCTTGCTTCTGTTACTTGTACTTCCTGGCTGAATCTCTCTACCAAATTC 207496 Query 24525 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 24584 ||||| || ||||| || ||||||||||| || | |||||| ||||||| | || Sbjct 207497 TCATTAACAATTCCATCTGAAGCTGCAAAAAATGCTAGTACATGGGAGATAAAATGTCTT 207556 Query 24585 TCGTCTGGTGTTAGTTTATTCCAAT 24609 || ||| ||| || | ||||||| Sbjct 207557 TCATCTTCTGTCAGCATGTTCCAAT 207581 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 || |||| ||||||||||||| | |||||||| || || |||||||| || ||||| | | Sbjct 207894 TTGGATAAATCCACTTCTTCCGCAGTCCAAAACGAAGCTTCTGCCTTCTTGTACATTTGC 207953 Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAATC 24717 || ||||| |||||||| || || || || ||||||| Sbjct 207954 CATATGTCGTGATATTGGATGGGGAAGATTACAAATC 207990 >seq95 Length=16868 Score = 120 bits (132), Expect = 4e-22 Identities = 167/226 (74%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 53939 GTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAA-TCCAGGACATTCATCCGG 53997 |||||||| ||||||| ||| ||||| || | | || ||||||||| ||| ||| Sbjct 6552 GTATACAAGTCATCAAACTTGTCACCCCAG-CAGTCTGAAAGTCCAGGACAAGCATGCGG 6610 Query 53998 ACACATCAACGACCAC-TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 54056 |||||||| |||| ||| ||| | ||||||||| |||||||| ||||||||||||| Sbjct 6611 ACACATCAGACTCCACATCT-CGTTGTTCTTCACTCGCTTCATAAATAGATCAGGAATCC 6669 Query 54057 AAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115 | ||||| ||| || ||||| | | || | |||||| || || || || || || || Sbjct 6670 ACAGAGC-ATAGAAAAGATCCCGAGCTCGAATTTCCTCTTTCCCCGTGTTTTTCTTCAGG 6728 Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 54161 || || ||| | | | ||| | |||||| ||||||| || |||| Sbjct 6729 TCAAGAAACTCAAACACATCTGCATGCCAGGGTTCCAGATAAATGG 6774 Score = 95.1 bits (104), Expect = 1e-14 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 53384 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 53443 ||| | || || || ||||| || ||||| || ||||||||||| ||||| || || Sbjct 4429 CCTTCGTAAGTCTCATATGGGCCCCGTTTCTCGGCAAGTTCACAACTTGCCTCCAAAGCC 4488 Query 53444 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 53503 ||||| ||||| || || || |||| || |||||| | ||||| || || |||||| Sbjct 4489 CCGTAGTAAATAGTCTCAAATATCTGCTGATTTAGCTTCTGTGCCTCTTCACTGTCAAAT 4548 Query 53504 GGATAAT-TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 53553 || |||| | ||| || ||||| ||||| || ||||| | ||||| || Sbjct 4549 GG-TAATCTCAAGCAGATGAACGCATCTGCCAAACCTTGTATGCCAATGCC 4598 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 52874 CTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATA 52933 |||||| |||| || |||||| || | ||| || |||| || || ||||| || Sbjct 2507 CTCCATGCGTAGAAGTGCATAGACGTCAATTTTCCGTAGTTCGGTTCGGCAATATGAATG 2566 Query 52934 TTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTC 52993 |||| || || || || || ||||| || || | ||| ||||||||||| || || || Sbjct 2567 TTCAGGGACTGGCTCTGGTCAATGAACGCACCTCGGTCAGCAGCCATTTTGATTATAGTT 2626 Query 52994 TTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 || || || |||||||| | ||||| || | ||||||||| || |||| Sbjct 2627 TTCTGCGGGATTTCCCACACCGTTTTGTAGAGGGCCTTAATATCATCCGGAA 2678 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 54179 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 54238 || || || || || || | |||| || ||||| ||||||||||||||||| || | | Sbjct 7354 TTATTGCCACCTTGGTCCACATATCGTGCTGTGTTGTTATAAACTCTCAACATAGGCACA 7413 Query 54239 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 54298 || ||||| || | |||||||| || | ||||| || | || || |||||| Sbjct 7414 ATGCCATTCGAAGTGCCATTGGTGCCAGCTATATACGAGCCTGTAGCGCGGATATTATGG 7473 Query 54299 ATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 54358 || || || || || || || ||||| || | ||| ||| |||| | || ||| Sbjct 7474 ATGTGGAGTCCGATTCCACCAGCAGACTTAGAAATCAGTGCACATTGTTTCAGTGTGTCA 7533 Query 54359 TAGATGCCCTCTATACTATCATCCATCAT 54387 || || ||||| || || || ||| |||| Sbjct 7534 TAAATTCCCTCAATGCTGTCGTCCTTCAT 7562 Score = 84.2 bits (92), Expect = 3e-11 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttG-TTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGA 54826 ||||||| ||| |||||| |||| || |||||||| || ||||| ||||| || || ||| Sbjct 10573 CACTAAA-AGTCTTTTTGGTTTCCTTATGTAGATTGGAGACGGCAATTCTGGCTGCAAGA 10631 Query 54827 ATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCC 54886 || || ||||||||||| | || || || || || | || || | ||| | ||| Sbjct 10632 ATCGCGTAATCCGGATGCTTGGTTGTCATGGTAGCAGCAGTCTCAGCGGCCAGGTTATCC 10691 Query 54887 AATTCTACCGTTGTTACTCC 54906 | ||| || |||||||| || Sbjct 10692 AGTTCCACTGTTGTTACACC 10711 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||| ||||| |||| || | | |||||| ||||| | ||||||||||| | Sbjct 3753 ACCTGAAACTCTCCGGACAGCACACGTCTAGTGTAGATATTTGTTGTATACGGTTCAAAT 3812 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 53259 ||||| || ||||| | |||||||| ||||| || |||||||| || || Sbjct 3813 GACTCGTTGTTTCCAAGGATTTGAGCCGTTGAAGCTGTCGGCATTGGCGC 3862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593486619833760