Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq950 123 2e-23 seq623 102 7e-17 >seq950 Length=836093 Score = 123 bits (136), Expect = 2e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| |||||||| || | ||| | || || ||||| || || ||||| || | Sbjct 302152 CCACCTCGAAGCCTGAGGACGAGATGAAGTGTAGATTCCTTCTGGATATTATAATCAGAG 302211 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| || | ||||||||||| ||||| ||| | || |||| ||||||||| || Sbjct 302212 AGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGTGGA 302271 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| |||||| | | | |||||| | ||| | Sbjct 302272 ATTCCTTCCTTGTCTTGGATCTTGGCTTTCACATTCTCAATCGTATCAGATGCTTCCACT 302331 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAATCT 21184 || | |||||||||||||| || | ||||| || || || ||||| || |||| Sbjct 302332 TCTAAAGTAATGGTCTTGCCAGTCAGAGTTTTCACGAAAATCTGCATGATGTATCT 302387 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || ||||| || || || ||||| || | |||||| || | ||||||||||| ||||| Sbjct 297509 GTAGACTCTTTCTGGATATTATAATCTGAGAGGGTTCGGCCATCCTCCAGCTGCTTGCCA 297568 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || |||| ||||||||| || | |||||| ||||| |||||| |||| Sbjct 297569 GCAAAGATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTC 297628 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | |||||| | ||| ||||| |||||||| || || || || ||| Sbjct 297629 ACGTTCTCAATTGTATCAGAAGCCTCTACTTCCAGAGTAATGGTTTTTCCTGTCAAGGTT 297688 Query 21159 TTGACAAATATTTGCAT 21175 ||||||||||| ||||| Sbjct 297689 TTGACAAATATCTGCAT 297705 Score = 111 bits (122), Expect = 1e-19 Identities = 140/191 (73%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 20986 CCTTT-TGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAA 21044 ||||| || ||||| ||||||| || ||| || | || |||||||| ||||| ||| | Sbjct 301960 CCTTTCTGGATGTTGTAGTCCGACAAAGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 302019 Query 21045 ATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGG 21104 || |||| ||||||||| || | |||||||||||| |||||| |||||| | Sbjct 302020 ATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTGGCTTTCACATTC 302079 Query 21105 CCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACA 21164 | | ||||| | |||| ||||| ||||| || ||||| || || |||||||| Sbjct 302080 TCAATCGTATCTGATGCCTCCACTTCCAAAGTAATCGTTTTGCCTGTCAAGGTTTTGACG 302139 Query 21165 AATATTTGCAT 21175 ||||| ||||| Sbjct 302140 AATATCTGCAT 302150 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| |||||||| || | || | || || ||||| || || ||||| || | Sbjct 297707 CCACCTCGAAGCCTGAGGACGAGGTGAAGTGTAGATTCCTTCTGGATATTATAATCTGAG 297766 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| || | ||||||||||||||||| ||| | || |||| ||||||||| || Sbjct 297767 AGGGTTCGGCCATCCTCCAGCTGTTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGTGGA 297826 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCAC 21100 | ||||| ||||| |||||| |||||| Sbjct 297827 ATTCCTTCTTTGTCCTGGATCTTGGCTTTCAC 297858 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || ||||| || || ||||| ||||| | || ||| || | ||||||||||| ||||| Sbjct 299002 GTAGACTCTTTCTGGATGTTGTAGTCTGACAAAGTTCGGCCATCCTCCAGCTGCTTGCCA 299061 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || |||| ||||||||| || | |||||||||||| |||||| |||| Sbjct 299062 GCAAAGATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTC 299121 Query 21099 AC 21100 || Sbjct 299122 AC 299123 >seq623 Length=111817 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | || |||| ||||| || || || || || ||||| || || | Sbjct 107648 CCACCTCGGAGGCGAAGAACCAAATGCAGGGTTGATTCTTTCTGGATGTTGTAATCTGAT 107707 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG-GG 21067 | ||| || | ||||||| || ||||| ||| | ||||||| ||||||| ||| | || Sbjct 107708 AAGGTACGGCCATCCTCCAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGG-CCAGGAGG 107766 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||||||||||| ||||||| |||||| | | | |||||| | ||||| Sbjct 107767 GATACCTTCCTTGTCCTGGATCTTTGCTTTCACGTTCTCAATGGTATCAGCTGGCTCTAC 107826 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||| || || | || || ||||| || ||||| Sbjct 107827 CTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAAATCTGCAT 107874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422096258355992