Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq513 122 9e-23 seq950 93.3 4e-14 seq1183 89.7 5e-13 seq583 87.8 2e-12 >seq513 Length=652068 Score = 122 bits (134), Expect = 9e-23 Identities = 164/225 (73%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 || || |||||| | |||||||||||||| || ||| ||||||| || ||||| || | Sbjct 206768 TTATTTAACGCCGTTGAGACGATGCCGTGTGTGAAAAAGAAGGCAGATTGGGCCCTTCAG 206709 Query 117005 TGGATCGCCGGCA-GAGA-GGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCG 117062 ||||| || ||| || | || | || || ||| | |||| || || || || || | Sbjct 206708 TGGATAGC--GCACGAAACTGCGACGTTTGGTGAGAGAGTGGTTGCGTTTGCTGCAGTGG 206651 Query 117063 AGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCA 117122 | || ||||||| || || ||||| || || || || ||| | ||||| || || || | Sbjct 206650 AAGGTATCTTCTTCTCTGGAAGTTTTGCTGCTATCTTCTGGTTAAAGAAGCGGGGACTTA 206591 Query 117123 TGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 ||||||| || || |||||||| || || || || | ||||||| Sbjct 206590 TGCCCGGTCTCACCTTCAGCAATGAACTTATTTCACGAGACGAGG 206546 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 116741 CATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAAT 116800 ||||| ||| || || || || ||||| || || || || || || || |||||| Sbjct 207552 CATTTTATCTCCCATGTACTAGCATTTTTTGCAGCTTCAGATGGAATTGTTAATGAGAAT 207493 Query 116801 CTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTT 116860 |||| ||| | ||| ||||| || || || | || || | |||||||| |||||| Sbjct 207492 TTGGTAGAGAGATTCAGCCAGGAAGTACAAGTAACAGAAGCAAGATGCTTCTATGGCTTT 207433 Query 116861 CAGATCGCCATGGAGAACGTGCACTCGGAAATGTAT 116896 ||||| || ||||| || || || || ||||||||| Sbjct 207432 CAGATAGCGATGGAAAATGTCCATTCAGAAATGTAT 207397 >seq950 Length=836093 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || ||||| ||||| || | || || ||||| | Sbjct 302378 ATGCAGATTTTCGTGAAAACTCTGACTGGCAAGACCATTACTTTAGAAGTGGAAGCATCT 302319 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || || | | || | || || | ||||| || || || || | ||||| Sbjct 302318 GATACGATTGAGAATG-TGAAAGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGACCA 302260 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| || ||||| |||||||| || | || |||||| || || || Sbjct 302259 GCAGCGACTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTCTCTGATTATAA 302200 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| | || || ||||| || Sbjct 302199 TATCCAGAAGGAATCTACACTTCATCTCGT 302170 Score = 82.4 bits (90), Expect = 8e-11 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| ||||| | || |||||||| || || | || || || || | Sbjct 302150 ATGCAGATATTCGTCAAAACCTTGACAGGCAAAACGATTACTTTGGAAGTGGAGGCATCA 302091 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || || | | || | || || | ||||| || ||||| || | ||||| Sbjct 302090 GATACGATTGAGAATG-TGAAAGCCAAGATCCAAGACAAGGAAGGCATTCCACCAGACCA 302032 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| || ||||| |||||||| || | || || | |||||||| Sbjct 302031 GCAGCGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACTTTGTCGGACTACAA 301972 Query 40869 CATCCAGAA 40877 ||||||||| Sbjct 301971 CATCCAGAA 301963 >seq1183 Length=31732 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || |||||||| | || || || |||| | Sbjct 15879 ATGCAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTAGA-GCCAGC 15821 Query 40750 -GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | | || ||| |||| | | ||||| || || |||||| | || || Sbjct 15820 TGATACCATTGAGAATCTAAAGAAAAAGCTGCAGGACAAGGAAGGTATCCCCCCTGAGCA 15761 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| || ||||| || |||| || | |||||| | || ||||| Sbjct 15760 GCAGCGACTTATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACCTTATCAGATTACAA 15701 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||| || |||| || || | || ||||| Sbjct 15700 CATCCAGAAAGAATCCACCCTCCACTTGGTATTGCG 15665 >seq583 Length=527131 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||||||||| || ||||| ||||| || ||| |||| || || || | Sbjct 232858 AATGCAAATTTTCGTAAAAACCCTAACGGGTAAAACTATAACCCTCGAAGTTGAGGCGTC 232917 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||| |||||| || |||| || ||||| || ||||| ||||||| Sbjct 232918 GGATACCATAGAAAATGTCAAGGCTAAGATTCAAGATAAAGAAGGTATCCCACCGGACCA 232977 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||| | |||| || || || || | || || | ||||| | || || || Sbjct 232978 ACAGCGATTGATCTTTGCTGGGAAGCAATTAGAAGATGGTCGCACGTTGTCGGATTATAA 233037 Query 40869 CATCCAGAAGG 40879 || ||||||| Sbjct 233038 TATTCAGAAGG 233048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515015289121120