Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1183 96.9 3e-15 seq950 95.1 1e-14 seq70 95.1 1e-14 seq623 89.7 4e-13 seq352 82.4 7e-11 >seq1183 Length=31732 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| |||||||||| || || ||||| || |||||||||| | Sbjct 15651 TACCACCACGCAGACGCAATACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAAT--C 15708 Query 118570 TCATA--GTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 | ||| ||||| ||| || | || || ||||| |||| || |||||||| || || Sbjct 15709 TGATAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGCTCAGG 15768 Query 118628 AGGTATGCCCTCCTTGT-CTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCT 118686 || || || ||||||| ||| | ||||| ||| | | || | ||| || | || Sbjct 15769 GGGGATACCTTCCTTGTCCTGCAGCTTTTTCTTT-AGATTCTCAATGGTATCAGCTGGCT 15827 Query 118687 CGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | ||||| | || | || || || ||||| || || || |||||||||||| Sbjct 15828 CTACCTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATG 15880 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATA--GTGCGCGTATCCT 118587 |||||||| | || || |||| || |||||||||| || ||| ||||| ||| | Sbjct 15443 ACCAAGTGCAGGGTTGATCCTTTCTGGATGTTGTAAT--CTGATAAGGTGCGGCCATCTT 15500 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CT 118646 | | || || ||||| | || || |||||||| || || || || || ||||||| || Sbjct 15501 CCAATTGCTTGCCAGCAAACATAAGTCGCTGCTGCTCAGGGGGGATACCTTCCTTGTCCT 15560 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 | | ||||| ||| | | || | ||| || | ||| ||||| | || | || Sbjct 15561 GCAGCTTTTTCTTT-AGATTCTCAATGGTATCAGCTGGCTCTACCTCCAGAGTGATGGTC 15619 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| || || |||||||||||||| Sbjct 15620 TTCCCTGTCAGGGTCTTCACAAAAATCTGCAT 15651 >seq950 Length=836093 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| |||||||||||| || |||||||| || || ||| || |||||| Sbjct 298989 CACAAGGTGGAGTGTAGACTCTTTCTGGATGTTGTAGTCTGACAAAGTTCGGCCATCCTC 299048 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||| || ||||| |||| || |||||||| || || || ||||| |||||||| Sbjct 299049 CAGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTC 299105 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| |||||||||||| || || || ||||| | || || |||||| Sbjct 297496 CACAAGGTGGAGTGTAGACTCTTTCTGGATATTATAATCTGAGAGGGTTCGGCCATCCTC 297555 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || ||||| |||| || |||||||| || || || ||||| || ||||| Sbjct 297556 CAGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCCTG 297615 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||| || | || | || || | ||| || || | || | ||||| Sbjct 297616 GATCTTGGCTTTCACGTTCTCAATTGTATCAGAAGCCTCTACTTCCAGAGTAATGGTTTT 297675 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||| ||||| ||||| ||||||||| Sbjct 297676 TCCTGTCAAGGTTTTGACAAATATCTGCATG 297706 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 118541 TGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCC 118600 |||||| || || || || || ||||| | || || |||||| ||||| || || Sbjct 302181 TGTAGATTCCTTCTGGATATTATAATCAGAGAGGGTTCGGCCATCCTCCAGCTGCTTGCC 302240 Query 118601 AGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTT 118660 ||| |||| || |||||||| || || || || || ||||||||| || || ||| Sbjct 302241 AGCAAAGATCAGTCGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCTTT 302300 Query 118661 AACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 || | || | || || | |||| || || || | || | || ||||| ||||||| Sbjct 302301 CACATTCTCAATCGTATCAGATGCT-TCCACTTCTAAAGTAATGGTCTTGCCAGTCAGAG 302359 Query 118720 TTTTTACAAAAATCTGCATG 118739 |||| || |||||||||||| Sbjct 302360 TTTTCACGAAAATCTGCATG 302379 >seq70 Length=429657 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATA--GTGCGCGTATCCT 118587 |||||||| | || || ||||| || |||||||||| || ||| ||||| ||||| Sbjct 142558 ACCAAGTGCAGGGTTGATTCTTTATGGATGTTGTAAT--CTGATAAGGTGCGGCCATCCT 142501 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | | || || ||||| | || | ||| || |||| ||||| || || |||||||| Sbjct 142500 CCAATTGCTTGCCAGCAAAAATTAAACGTTGTTGATGAGGAGGAATTCCTTCCTTGTCCT 142441 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTT 118706 ||||||| |||| | | ||| |||||||| | || | || || || | || | ||| Sbjct 142440 GAATTTTTCGTTTCAAGTTTTCAACGGTGTCAGATGGT-TCAACTTCAAGAGTAATGGTT 142382 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| || ||||| | ||||| Sbjct 142381 TTTCCAGTGAGAGTCTTCACAAAGACTTGCAT 142350 >seq623 Length=111817 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATA--GTGCGCGTATCCT 118587 ||||| || | || || ||||| || |||||||||| || ||| || || ||||| Sbjct 107666 ACCAAATGCAGGGTTGATTCTTTCTGGATGTTGTAAT--CTGATAAGGTACGGCCATCCT 107723 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | | || || ||||| |||| || |||||||| | ||||| || || |||||||| Sbjct 107724 CCAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGGCCAGGAGGGATACCTTCCTTGTCCT 107783 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || ||| ||| || | || | ||| || | ||| ||||| | || | || | Sbjct 107784 GGATCTTTGCTTTCACGTTCTCAATGGTATCAGCTGGCTCTACCTCCAGAGTGATGGTCT 107843 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || ||||| || || ||||||||||||||| Sbjct 107844 TCCCTGTCAGGGTCTTCACAAAAATCTGCATG 107875 >seq352 Length=269356 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTTTTTG 118657 ||||| |||| || |||||||| || || |||||||||||||||| ||| | ||||| Sbjct 26147 CCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGTATGCCCTCCTTGTCCTGCAGCTTTTTC 26206 Query 118658 TTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 ||| || || | ||| || | |||| ||||| | || | || || || ||||| Sbjct 26207 TTT-ACAGCCTCAATGGTATCAGCTGTCTCTACCTCCAGAGTGATGGTCTTCCCTGTCAG 26265 Query 118718 AGTTTTTACAAAAATCTGCATG 118739 || || ||||||||||||||| Sbjct 26266 GGTCTTCACAAAAATCTGCATG 26287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433662993254104