Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq837 113 5e-20 seq78 111 2e-19 seq11 111 2e-19 seq288 109 6e-19 seq292 105 8e-18 seq429 104 3e-17 seq98 91.5 2e-13 seq950 84.2 2e-11 >seq837 Length=358257 Score = 113 bits (124), Expect = 5e-20 Identities = 74/81 (91%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 165633 AAAAATT--CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 165690 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 165691 TCACCACTATACTACCGAGGA 165711 Score = 111 bits (122), Expect = 2e-19 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 60053 TATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112 ||| ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| Sbjct 196912 TATAAAAAAAAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 196853 Query 60113 ATACTCACCACTATACTACCGAGGAT 60138 ||||| |||||||||||||||||||| Sbjct 196852 ATACTTACCACTATACTACCGAGGAT 196827 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 289058 AAAAAAGTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 288999 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 288998 TTACCACTATACTACCGAGGA 288978 Score = 107 bits (118), Expect = 2e-18 Identities = 80/93 (86%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 136388 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 136329 Query 60117 TCACCACTATACTACCGAGGA--TTGAATATAT 60147 | ||||||||||||||||||| |||||||| Sbjct 136328 TGACCACTATACTACCGAGGACCACGAATATAT 136296 Score = 107 bits (118), Expect = 2e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 167780 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 167721 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 167720 TACTACCGAGGA 167709 >seq78 Length=5111804 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| || |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1568958 AAAAAATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1568899 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 1568898 TGACCACTATACTACCGAGGA 1568878 >seq11 Length=465736 Score = 111 bits (122), Expect = 2e-19 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| || |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 76410 AAAAAATTACTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 76351 Query 60117 TCACCACTATACTACCGAGGATTG 60140 | ||||||||||||||||||| || Sbjct 76350 TGACCACTATACTACCGAGGACTG 76327 >seq288 Length=478868 Score = 109 bits (120), Expect = 6e-19 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 230421 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 230480 Query 60117 TCACCACTATACTACCGAGGATTGA 60141 | ||||||||||||||||||| ||| Sbjct 230481 TGACCACTATACTACCGAGGACTGA 230505 >seq292 Length=1419743 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 857158 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 857217 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 857218 TGACCACTATACTACCGAGGA 857238 >seq429 Length=1441331 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 519298 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 519239 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 519238 TACTACCGAGGA 519227 >seq98 Length=2459076 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 60068 CCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATA 60127 || |||| |||||| ||| || ||||||||||||||||||||| ||||| ||||||||| Sbjct 2009993 CCCCGGCGGGGAATGGAAACCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTATA 2009934 Query 60128 CTACCGAGGA 60137 |||||||||| Sbjct 2009933 CTACCGAGGA 2009924 >seq950 Length=836093 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || ||||| ||||||| || || || | || || |||||||| ||||| || Sbjct 302188 TCCTTCTGGATATTATAATCAGAGAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAG 302247 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || |||||||||||||| | || | | |||||||| ||| || ||| | || Sbjct 302248 ATCAGTCGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCTTTCACATTC 302307 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||| || | |||||| || | || ||||| ||||| || || || || || Sbjct 302308 TCAATCGTATCAGATGCTTCCACTTCTAAAGTAATGGTCTTGCCAGTCAGAGTTTTCACG 302367 Query 43173 AAGATTTGCAT 43183 || || ||||| Sbjct 302368 AAAATCTGCAT 302378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571591288889360