Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq513 136 4e-27 seq899 84.2 2e-11 >seq513 Length=652068 Score = 136 bits (150), Expect = 4e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 || || ||||| || | || ||||||||||||||||| | ||| ||||| ||||||||| Sbjct 207374 ATGTAGGTATCAATCAACAAGCTATACATTTCTGAATGGACATTTTCCATCGCTATCTGA 207433 Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAG 16624 || ||||| |||||||| ||||| | || ||||||||| | || || ||| | || Sbjct 207434 AAGCCATAGAAGCATCTTGCTTCTGTTACTTGTACTTCCTGGCTGAATCTCTCTACCAAA 207493 Query 16625 TTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttt 16684 || || ||||| |||||||| |||||||||||| || |||| || ||||||| | Sbjct 207494 TTCTCATTAACAATTCCATCTGAAGCTGCAAAAAATGCTAGTACATGGGAGATAAAATGT 207553 Query 16685 ttttCGTTATCTG 16697 |||| | |||| Sbjct 207554 CTTTCATCTTCTG 207566 >seq899 Length=978777 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 57894 CAGATTATATTAGGCCCAATGTTTTCTGGTAAAAGTACAGAATTAATTAGAATATTAAAA 57953 |||||||| || || |||||||||||||| |||| |||||||||||| || ||| ||| Sbjct 357128 CAGATTATTTTTGGTCCAATGTTTTCTGGGAAAACTACAGAATTAATACGACGATTGAAA 357069 Query 57954 CGGTATCAAATTGCTAGGTATACTTGCTTTGTAATAAAATA 57994 || || || || || | ||| | ||| || | |||||||| Sbjct 357068 CGTTACCAGATAGCAAAGTACAAGTGCCTTATTATAAAATA 357028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462328949313200