Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1183 89.7 4e-13 seq623 87.8 1e-12 seq70 84.2 2e-11 seq950 82.4 6e-11 >seq1183 Length=31732 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTC 45183 ||||||||||| || ||| || ||||| |||||||| || | | || | ||| | || Sbjct 15668 AATACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCTGATAAGGT-GCGGCCATC 15726 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 |||| ||| || || || || || | ||||| || || || || | ||| |||||||| Sbjct 15727 TTCCAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGCTCAGGGGGGATACCTTCCTTGTC 15786 Query 45244 C-GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCG 45302 | ||| ||||| ||| | | | | | | || | ||| ||||||| || || | Sbjct 15787 CTGCAGCTTTTT-CTTTAGATTCTCAATGGTATCAGCTGGCTCTACCTCCAGAGTGATGG 15845 Query 45303 TCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| || ||||| |||||||| || || |||||| Sbjct 15846 TCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATG 15880 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGT-GCTCTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGT 45185 ||||||||||| || | || | ||||| |||||||| || | | || || || | || | Sbjct 15443 ACCAAGTGCAGGGTTGATC-CTTTCTGGATGTTGTAATCTGATAAGGTG-CGGCCATCTT 15500 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC- 45244 ||| ||| || || || || || | ||||| || || || || | ||| ||||||||| Sbjct 15501 CCAATTGCTTGCCAGCAAACATAAGTCGCTGCTGCTCAGGGGGGATACCTTCCTTGTCCT 15560 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| ||||| ||| | | | | | | || | ||| ||||||| || || ||| Sbjct 15561 GCAGCTTTTT-CTTTAGATTCTCAATGGTATCAGCTGGCTCTACCTCCAGAGTGATGGTC 15619 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||| ||||||||||| || ||||| Sbjct 15620 TTCCCTGTCAGGGTCTTCACAAAAATCTGCAT 15651 >seq623 Length=111817 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 45149 TTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATC 45208 ||||| || |||||||| ||| ||| | || |||| || ||||| || || || Sbjct 110332 TTCTGTATATTGTAGTCAGAAAGTGTACGACCATCTTCCAACTGCTTTCCTGCAAAAATT 110391 Query 45209 AACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCC 45268 || || ||||| || ||||| | || ||||||||| ||||||| ||||| | Sbjct 110392 AAACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTGAATTTTTGCTTTAACGTTTTCA 110451 Query 45269 ACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAG 45328 | | |||| ||||| || | |||| || || || || ||||||||||||||| Sbjct 110452 ATGGTGTCAGACGTTTCCACTTCAAGAATAATGGTTTTTCCAGTGAGAGTCTTCACAAAG 110511 Query 45329 ATTTGCATGTTGCCTCAATACA 45350 |||||||| || |||||||| Sbjct 110512 ATTTGCATCCTG--TCAATACA 110531 >seq70 Length=429657 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/224 (69%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGTC 45186 ||||||||||| || || || || |||||||| || | | || || || | || || Sbjct 142558 ACCAAGTGCAGGGTTGATTCTTTATGGATGTTGTAATCTGATAAGGTG-CGGCCATCCTC 142500 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || ||| || || || || || || || ||||| | ||||| | || ||||||||| Sbjct 142499 CAATTGCTTGCCAGCAAAAATTAAACGTTGTTGATGAGGAGGAATTCCTTCCTTGTCCTG 142440 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||||||| | || | | ||| |||| || || || | ||||| || || Sbjct 142439 AATTTTTCGTTTCAAGTTTTCAACGGTGTCAGATGGTTCAACTTCAAGAGTAATGGTTTT 142380 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTCAATACA 45350 || || |||||||||||||||| |||||| || |||||||| Sbjct 142379 TCCAGTGAGAGTCTTCACAAAGACTTGCATCCTG--TCAATACA 142338 >seq950 Length=836093 Score = 82.4 bits (90), Expect = 6e-11 Identities = 133/191 (70%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 || ||||| ||||||| || |||| ||| | || ||||| || || || || || Sbjct 300685 TCTTTCTGGTTGTTGTAATC---CAGTGTGCGTCCATCCTCCAGCTGCTTGCCAGCAAAG 300741 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| |||||||| || || || | || || |||||| ||| || ||||| | Sbjct 300742 ATCAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTAACATTC 300801 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | || | |||| || |||| || || |||||||| ||||||||||| ||| Sbjct 300802 TCAATCGTATCAGAAGCCTCTACTTCCAATGTGATTGTCTTGCCTGTCAGAGTCTTAACA 300861 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 300862 AAGATCTGCAT 300872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394922748134902