Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq70 86.0 5e-12 seq1183 84.2 2e-11 >seq70 Length=429657 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| ||| || ||||||||||| || |||||||| || | Sbjct 142576 CCACCTCGGAGGCGAAGAACCAAGTGCAGGGTTGATTCTTTATGGATGTTGTAATCTGAT 142517 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| |||||||| ||||| ||| | || | | |||||||| || Sbjct 142516 AAGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAAATTAAACGTTGTTGATGAGGAGGA 142457 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || ||||| | | || | | | |||| |||||| || || | Sbjct 142456 ATTCCTTCCTTGTCCTGAATTTTTCGTTTCAAGTTTTCAACGGTGTCAGATGGTTCAACT 142397 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || ||| |||| || || | || || ||||| | |||||| Sbjct 142396 TCAAGAGTAATGGTTTTTCCAGTGAGAGTCTTCACAAAGACTTGCAT 142350 >seq1183 Length=31732 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| ||| || |||||| |||| || |||||||| || | Sbjct 15425 CCACCTCGGAGGCGAAGAACCAAGTGCAGGGTTGATCCTTTCTGGATGTTGTAATCTGAT 15484 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||||||| ||||| ||| | ||||||| || || || ||| Sbjct 15485 AAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAACATAAGTCGCTGCTGCTCAGGGGGG 15544 Query 18219 ACGCCTTCCTTAT-CGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| | | ||| || || ||| | | ||| || ||| | ||||| Sbjct 15545 ATACCTTCCTTGTCCTGCAGCTT-TTTCTTTAGATTCTCAATGGTATCAGCTGGCTCTAC 15603 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | || || |||| || || |||||||| ||||| Sbjct 15604 CTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAAATCTGCAT 15651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379197618500190