Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq95 127 2e-24 seq513 120 3e-22 seq70 95.1 1e-14 seq623 91.5 1e-13 seq1183 89.7 5e-13 seq950 89.7 5e-13 >seq95 Length=16868 Score = 127 bits (140), Expect = 2e-24 Identities = 170/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 23258 TACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCAT-CGGACA 23316 ||||| | ||||| | | |||| | ||||| | || || || | |||| |||||| Sbjct 6555 TACAAGTCATCAAACTTGTCACCCCAGCAGTCTGAAAGTCCAGGACAA-GCATGCGGACA 6613 Query 23317 CATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAG 23376 ||| ||||||||||| || || | || || ||||||| ||||| || ||||| || Sbjct 6614 CATCAGACTCCACATCTCGTTGTTCTTCACTCGCTTCATAAATAGATCAGGAATCCACAG 6673 Query 23377 AGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAA 23436 ||| ||||| || || || || || | |||||||| || ||||| || |||| || | Sbjct 6674 AGCATAGAAAAGATCCCGAGCTCGAATTTCCTCTTTCCCCGTGTTTTTCTTCAGGTCAAG 6733 Query 23437 AAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGG 23490 ||| || ||||| || |||||||| || || || |||| |||||| || || || Sbjct 6734 AAACTCAAACACATCTGCATGCCAGGGTTCCAGATAAATGGCAAATGCTCCTGG 6787 Score = 104 bits (114), Expect = 2e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 23494 CTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCAC 23553 ||||||||| || || || || || || || |||||||| || ||||| | ||| ||||| Sbjct 7353 CTTATTGCCACCTTGGTCCACATATCGTGCTGTGTTGTTATAAACTCTCAACATAGGCAC 7412 Query 23554 GAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTG 23613 | || || || | ||| ||| || | | ||| ||| | || || | || || Sbjct 7413 AATGCCATTCGAAGTGCCATTGGTGCCAGCTATATACGAGCCTGTAGCGCGGATATTATG 7472 Query 23614 AACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTC 23673 | ||||| || || || || | || || || |||| || ||||||||||| ||||| Sbjct 7473 GATGTGGAGTCCGATTCCACCAGCAGACTTAGAAATCAGTGCACATTGTTTCAGTGTGTC 7532 Query 23674 GTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACA 23718 || || ||||| |||||||| || || | || | ||||||||| Sbjct 7533 ATAAATTCCCTCAATGCTGTCGTCCTTCATTGCCAGCAAGAAACA 7577 >seq513 Length=652068 Score = 120 bits (132), Expect = 3e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 57662 AGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTAT 57721 |||| ||| ||| ||||||| || || | || ||||| || || || ||||| || Sbjct 207565 AGAAGATGAAAGACATTTTATCTCCCATGTACTAGCATTTTTTGCAGCTTCAGATGGAAT 207506 Query 57722 TGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATG 57781 |||||| ||||||||||| || ||||| || ||||| ||||| || || || ||||| Sbjct 207505 TGTTAATGAGAATTTGGTAGAGAGATTCAGCCAGGAAGTACAAGTAACAGAAGCAAGATG 207446 Query 57782 CTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTAT 57830 ||| || || ||||| | || || ||||| || ||||||||||||||| Sbjct 207445 CTTCTATGGCTTTCAGATAGCGATGGAAAATGTCCATTCAGAAATGTAT 207397 Score = 95.1 bits (104), Expect = 1e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGG 57974 ||||||||||| ||| | | | |||||| || || || ||||| | ||||| Sbjct 206732 AAGAAGGCAGATTGGGCCCTTCAGTGGATAGCGCACGAAACTGCGACGTTTGGTGAGAGA 206673 Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 | | ||||| || || || |||||||| ||||| || || || ||||| || || || Sbjct 206672 GTGGTTGCGTTTGCTGCAGTGGAAGGTATCTTCTTCTCTGGAAGTTTTGCTGCTATCTTC 206613 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||| || || || |||||||| || || || ||||| || | || || || Sbjct 206612 TGGTTAAAGAAGCGGGGACTTATGCCCGGTCTCACCTTCAGCAATGAACTTATTTCACGA 206553 Query 58095 GACGAGG 58101 ||||||| Sbjct 206552 GACGAGG 206546 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 57524 AGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTA 57583 |||||| || | ||||||| || || || || |||||| ||||| ||| | ||||| Sbjct 208004 AGAGAACCCAAGACGATTTGTAATCTTCCCCATCCAATATCACGACATATGGCAAATGTA 207945 Query 57584 CAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGG 57636 ||| ||||||||||| ||||||||||| | |||||||| || | || |||| Sbjct 207944 CAAGAAGGCAGAAGCTTCGTTTTGGACTGCGGAAGAAGTGGATTTATCCAAGG 207892 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/145 (73%), Gaps = 6/145 (4%) Strand=Plus/Minus Query 58335 AATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaa 58394 || || ||||| || ||| | || || || || || || |||||||||||||| || || Sbjct 205943 AACCCTTTTGACTTCATGGAACTCATTTCTCTAGAAGGGAAGACAAACTTTTTTGAGAAG 205884 Query 58395 aaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGTAACAAGTTGGAGGACGATATT 58454 |||||| | || || || || | || |||||| | |||||| || || ||||| Sbjct 205883 AAAGTTGGAGAGTACCAGAAGTGTGGAGTGATG---GCTAACAA---AGAAGATAATATT 205830 Query 58455 TTCACTTTGGATGCTGCCTTTTAAT 58479 || || || ||||||| |||||||| Sbjct 205829 TTTACATTAGATGCTGACTTTTAAT 205805 >seq70 Length=429657 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||| | || || |||||||| || || ||||| || || | || |||||||| || Sbjct 142350 ATGCAAGTCTTTGTGAAGACTCTCACTGGAAAAACCATTACTCTTGAAGTTGAACCATCT 142409 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| || |||| | |||| | ||| |||||||||||| | || || | || Sbjct 142410 GACACCGTTGAAAACTTGAAACGAAAAATTCAGGACAAGGAAGGAATTCCTCCTCATCAA 142469 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGAC--TATGAGCGATTATA 31370 || ||| |||| || |||||||| || ||||| || || ||| | ||||| | Sbjct 142470 CAACGTTTAATTTTTGCTGGCAAGCAATTGGAGGATGGCCGCACCTTATCA--GATTACA 142527 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 |||| || |||||||| || || || |||| ||| Sbjct 142528 ACATCCATAAAGAATCAACCCTGCACTTGGTTCTT 142562 >seq623 Length=111817 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/217 (71%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| ||||| || ||||| |||||||| || || ||||| | || || || || | Sbjct 107875 CATGCAGATTTTTGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTAGAGCCAGC 107816 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 || | | || | || ||| || ||| | |||||||||||| | || || | || Sbjct 107815 TGATACCATTGAGAACGTGAAAGCAAAGA-TCCAGGACAAGGAAGGTATCCCTCCTGGCC 107757 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGAC--TATGAGCGATTA 31368 ||||||| || || || |||||||| || ||||| || || ||| | ||||| Sbjct 107756 AGCAGCGACTTATCTTTGCTGGCAAGCAATTGGAGGATGGCCGTACCTTATCA--GATTA 107699 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || |||||||| || || ||| |||| ||| Sbjct 107698 CAACATCCAGAAAGAATCAACCCTGCATTTGGTTCTT 107662 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || |||||||| || || ||||| || | | || || ||| |||| Sbjct 110519 ATGCAAATCTTTGTGAAGACTCTCACTGGAAAAACCATTATTCTTGAAGTGGAAACGTCT 110460 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | ||| |||||||||||| | || || || || Sbjct 110459 GACACCATTGAAAACGTTAAAGCAAAAATTCAGGACAAGGAAGGAATTCCTCCTGATCAA 110400 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 || ||| |||| || || || || ||||||||||| Sbjct 110399 CAACGTTTAATTTTTGCAGGAAAGCAGTTGGAAGA 110365 >seq1183 Length=31732 Score = 89.7 bits (98), Expect = 5e-13 Identities = 165/236 (70%), Gaps = 12/236 (5%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| |||||||| || || ||||| | || || || || | Sbjct 15880 CATGCAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTAGAGCCAGC 15821 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGC----GGACAAGGAAGGCGTGCCGCCCG 31307 || | | || | || || ||| || ||| |||||||||||| | || || | Sbjct 15820 TGATACCATTGAGAA--TCTAA-AGAAAA-AGCTGCAGGACAAGGAAGGTATCCCCCCTG 15765 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGAC--TATGAGCGA 31365 | |||||||| || || || |||||||| || |||||||| || ||| | || Sbjct 15764 AGCAGCAGCGACTTATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACCTTATCA--GA 15707 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| ||||| || |||||||| || || || ||||| | | ||| | || |||| Sbjct 15706 TTACAACATCCAGAAAGAATCCACCCTCCACTTGGTATTGCGTCTGCGTGGTGGTA 15651 >seq950 Length=836093 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| || |||||||| ||||| || || || | || || ||| | || Sbjct 302379 CATGCAGATTTTCGTGAAAACTCTGACTGGCAAGACCATTACTTTAGAAGTGGAAGCATC 302320 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || ||| | || ||||||||||| | || || ||||| Sbjct 302319 TGATACGATTGAGAATGTGAAAGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGACCA 302260 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || |||||||| ||| |||| || || | |||||||| Sbjct 302259 GCAGCGACTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTCTCTGATTATAA 302200 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || || || ||||| || |||||||| || || || || Sbjct 302199 TATCCAGAAGGAATCTACACTTCATCTCGTCCTCAGGCT 302161 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| || || |||||||||||||||| || | || || || | || Sbjct 302151 CATGCAGATATTCGTCAAAACCTTGACAGGCAAAACGATTACTTTGGAAGTGGAGGCATC 302092 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || ||| | || |||||||||||| | || || ||||| Sbjct 302091 AGATACGATTGAGAATGTGAAAGCCAAGATCCAAGACAAGGAAGGCATTCCACCAGACCA 302032 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| || || || |||||||| ||| ||||||| Sbjct 302031 GCAGCGACTGATCTTTGCTGGCAAGCAGCTGGAAGA 301996 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/210 (70%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||||||||||||||| || ||||| | || || || | || Sbjct 300872 ATGCAGATCTTTGTTAAGACTCTGACAGGCAAGACAATCACATTGGAAGTAGAGGCTTCT 300813 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| | || |||||| ||||| | || || || || Sbjct 300812 GATACGATTGAGAATGTTAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCTGATCAA 300753 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||||| || || || |||||||| ||| |||| || | | | || || ||||| || Sbjct 300752 CAGCGACTGATCTTTGCTGGCAAGCAGCTGGAGGA-TGGACGCACACTG---GATTACAA 300697 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || || |||||||| || || |||||||| Sbjct 300696 CAACCAGAAAGAATCAACACTCCATCTGGT 300667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445589976803040