Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq513 132 6e-26 seq95 114 2e-20 >seq513 Length=652068 Score = 132 bits (146), Expect = 6e-26 Identities = 169/230 (73%), Gaps = 7/230 (3%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 ||||||||| ||| | ||| || || ||||| |||||||| || || ||||| | Sbjct 206546 CCTCGTCTCGTGAAATAAGTTCATTGCTGAAGGTGAGACCGGGCATAAGTCCCCGCTTCT 206605 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||| || || | ||| || ||| || |||||||| ||||| ||||||||||| | Sbjct 206606 TTAACCAGAAGATAGCAGCAAAACTTCCAGAGAAGAAGATACCTTCCACTGCAGCAAACG 206665 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGC--TGTCATG---TATCCACTTTTGAGCCCAATC 33778 ||| | |||||| || || || ||| | || || |||||||| | |||||||| Sbjct 206666 CAACCACTCTCTCACC--AAACGTCGCAGTTTCGTGCGCTATCCACTGAAGGGCCCAATC 206723 Query 33779 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 33828 ||||||||||| ||||| |||||||| || | ||| ||||| | |||| Sbjct 206724 TGCCTTCTTTTTCACACACGGCATCGTCTCAACGGCGTTAAATAAGTAGT 206773 Score = 122 bits (134), Expect = 1e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || ||||| ||||| | ||||||||||| ||||| | ||||| || || |||||||| Sbjct 207377 TAGGTATCAATCAACAAGCTATACATTTCTGAATGGACATTTTCCATCGCTATCTGAAAG 207436 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTT 33971 || ||||| ||||| || || || | || ||||| | |||| ||| | ||||| Sbjct 207437 CCATAGAAGCATCTTGCTTCTGTTACTTGTACTTCCTGGCTGAATCTCTCTACCAAATTC 207496 Query 33972 TCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 34031 ||||| || |||||||| ||||||||||| || | |||||| ||||||| | || Sbjct 207497 TCATTAACAATTCCATCTGAAGCTGCAAAAAATGCTAGTACATGGGAGATAAAATGTCTT 207556 Query 34032 TCGTCTGGTGTTAGTTTATTCCAAT 34056 || ||| ||| || | ||||||| Sbjct 207557 TCATCTTCTGTCAGCATGTTCCAAT 207581 Score = 104 bits (114), Expect = 3e-17 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 || |||| ||||||||||||| | |||||||| || || |||||||| || ||||| | | Sbjct 207894 TTGGATAAATCCACTTCTTCCGCAGTCCAAAACGAAGCTTCTGCCTTCTTGTACATTTGC 207953 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAATC 34164 || ||||| ||||||||||| ||||| || ||||||| Sbjct 207954 CATATGTCGTGATATTGGATGGGGAAGATTACAAATC 207990 >seq95 Length=16868 Score = 114 bits (126), Expect = 2e-20 Identities = 167/228 (73%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 63176 AGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA-TCTAGGACATTCATCCG 63234 ||||||||| || |||| ||| ||||| || | | || || |||||| ||| || Sbjct 6551 AGTATACAAGTCATCAAACTTGTCACCCCAG-CAGTCTGAAAGTCCAGGACAAGCATGCG 6609 Query 63235 GACACATCAACGACCAC-TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 ||||||||| |||| ||| ||| | ||||||||| |||||||| |||||||||||| Sbjct 6610 GACACATCAGACTCCACATCT-CGTTGTTCTTCACTCGCTTCATAAATAGATCAGGAATC 6668 Query 63294 CAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63352 || ||||| ||| || ||||| | | || | |||||| || || || || || || || Sbjct 6669 CACAGAGC-ATAGAAAAGATCCCGAGCTCGAATTTCCTCTTTCCCCGTGTTTTTCTTCAG 6727 Query 63353 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 || || ||| | | | ||| | |||||| ||||||| || ||||| Sbjct 6728 GTCAAGAAACTCAAACACATCTGCATGCCAGGGTTCCAGATAAATGGC 6775 Score = 93.3 bits (102), Expect = 5e-14 Identities = 106/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 64006 CACTAAATAGtttttttG-TTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGA 64064 ||||||| ||| |||||| ||||||| |||||||| || | ||| |||||||| || ||| Sbjct 10573 CACTAAA-AGTCTTTTTGGTTTCCTTATGTAGATTGGAGACGGCAATTCTGGCTGCAAGA 10631 Query 64065 ATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCC 64124 || || ||||||||||| | || || || || || | || || ||||| | ||| Sbjct 10632 ATCGCGTAATCCGGATGCTTGGTTGTCATGGTAGCAGCAGTCTCAGCGGCCAGGTTATCC 10691 Query 64125 AATTCTACCGTTGTTACTCC 64144 | ||| || |||||||| || Sbjct 10692 AGTTCCACTGTTGTTACACC 10711 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 62112 CTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATA 62171 |||||| |||| || |||||| ||| | ||| || |||| || || ||||| || Sbjct 2507 CTCCATGCGTAGAAGTGCATAGACGTCAATTTTCCGTAGTTCGGTTCGGCAATATGAATG 2566 Query 62172 TTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTC 62231 |||| || || || || || ||||| || || | ||| ||||||||||| || || || Sbjct 2567 TTCAGGGACTGGCTCTGGTCAATGAACGCACCTCGGTCAGCAGCCATTTTGATTATAGTT 2626 Query 62232 TTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 || || | |||||||| | ||||| || | ||||||||| || |||| Sbjct 2627 TTCTGCGGGATTTCCCACACCGTTTTGTAGAGGGCCTTAATATCATCCGGAA 2678 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 || || || || || || | |||| || ||||| ||||||||||||||||| || | | Sbjct 7354 TTATTGCCACCTTGGTCCACATATCGTGCTGTGTTGTTATAAACTCTCAACATAGGCACA 7413 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTA 63536 || || || || | |||||||| || | ||||| || | || || |||||| Sbjct 7414 ATGCCATTCGAAGTGCCATTGGTGCCAGCTATATACGAGCCTGTAGCGCGGATATTATGG 7473 Query 63537 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63596 || || || ||||| || || ||||| || | ||| ||| |||| | |||||| Sbjct 7474 ATGTGGAGTCCGATTCCACCAGCAGACTTAGAAATCAGTGCACATTGTTTCAGTGTGTCA 7533 Query 63597 TAGATGCCTTCTATGCTATCATCGATCAT 63625 || || || || ||||| || || |||| Sbjct 7534 TAAATTCCCTCAATGCTGTCGTCCTTCAT 7562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629568333939360