Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq513 143 2e-29 >seq513 Length=652068 Score = 143 bits (158), Expect = 2e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 ||| |||| || ||||| || || || ||||||||||||||||| | ||||||||| || Sbjct 207367 ATCCCTTATGTAGGTATCAATCAACAAGCTATACATTTCTGAATGGACATTTTCCATCGC 207426 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTC 12009 ||| ||||| |||||||| |||| ||| |||| ||||| ||| ||||| || Sbjct 207427 TATCTGAAAGCCATAGAAGCATCTTGCTTCTGTTACTTGTACTTCCTGGCTGAATCTCTC 207486 Query 12010 CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTAT 12069 | ||||||||||| ||||| ||||| || ||||||||||||||||| ||| || Sbjct 207487 TACCAAATTCTCATTAACAATTCCATCTGAAGCTGCAAAAAATGCTAGTACATGGGAGAT 207546 Query 12070 AAAGTATTTTTCGTCTT 12086 ||| | | |||| |||| Sbjct 207547 AAAATGTCTTTCATCTT 207563 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/211 (70%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 || |||||||| || || | |||||||| | ||| || || |||| ||| || ||| Sbjct 206560 ATAAGTTCATTGCTGAAGGTGAGACCGGGCATAAGTCCCCGCTTCTTTAACCAGAAGATA 206619 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 |||||||| ||||| ||||| || || ||||| || ||||| || || ||||| || Sbjct 206620 GCAGCAAAACTTCCAGAGAAGAAGATACCTTCCACTGCAGCAAACGCAACCACTCTCTCA 206679 Query 11786 CCATA-----TACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTA 11840 ||| | | || ||| | |||||| | ||||||||| || |||||||| | Sbjct 206680 CCAAACGTCGCAGTTTCGTGC--GCTATCCACTGAAGGGCCCAATCTGCCTTCTTTTTCA 206737 Query 11841 CGCATTCCATTGTTTCTATAGCGTTAAATAA 11871 | || ||| || || | ||||||||||| Sbjct 206738 CACACGGCATCGTCTCAACGGCGTTAAATAA 206768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468339369597280