Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq513 131 2e-25 seq95 109 7e-19 >seq513 Length=652068 Score = 131 bits (144), Expect = 2e-25 Identities = 166/228 (73%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 ||||||||| ||| | ||| ||| || ||||| |||||||| || || ||||| | Sbjct 206546 CCTCGTCTCGTGAAATAAGTTCATTGCTGAAGGTGAGACCGGGCATAAGTCCCCGCTTCT 206605 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | ||| || || | ||||| |||||| ||||| || ||||| ||||| ||||| | Sbjct 206606 TTAACCAGAAGATAGCAGCAAAACTTCCAGAGAAGAAGATACCTTCCACTGCAGCAAACG 206665 Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTCATG---TATCCACTTTTGAGCCCAATCGG 36356 ||| | |||||| ||| | ||| | || || |||||||| | |||||||| | Sbjct 206666 CAACCACTCTCTCACCAAACGTCGCAGTTTCGTGCGCTATCCACTGAAGGGCCCAATCTG 206725 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGT 36404 |||||||||| ||||| ||||| ||||| | || ||||| | |||| Sbjct 206726 CCTTCTTTTTCACACACGGCATCGTCTCAACGGCGTTAAATAAGTAGT 206773 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 36428 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 36487 || ||||||||||| | ||||||||||| ||||| | ||||| || || || ||||| Sbjct 207377 TAGGTATCAATCAACAAGCTATACATTTCTGAATGGACATTTTCCATCGCTATCTGAAAG 207436 Query 36488 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 36547 || ||||| ||||| || || || | |||||||| | |||| ||| | ||||| Sbjct 207437 CCATAGAAGCATCTTGCTTCTGTTACTTGTACTTCCTGGCTGAATCTCTCTACCAAATTC 207496 Query 36548 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 36607 ||||| || ||||| || ||||||||||| || | |||||| ||||||| | || Sbjct 207497 TCATTAACAATTCCATCTGAAGCTGCAAAAAATGCTAGTACATGGGAGATAAAATGTCTT 207556 Query 36608 TCGTTTGGTGTTAGTTTATTCCAAT 36632 || | | ||| || | ||||||| Sbjct 207557 TCATCTTCTGTCAGCATGTTCCAAT 207581 Score = 95.1 bits (104), Expect = 2e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 36644 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 36703 || |||| ||||||||||||| | |||||||| || || |||||||| || ||||| | | Sbjct 207894 TTGGATAAATCCACTTCTTCCGCAGTCCAAAACGAAGCTTCTGCCTTCTTGTACATTTGC 207953 Query 36704 CAGATGTCATGATATTGAATTGGAAAAATAACAAATC 36740 || ||||| |||||||| || || || || ||||||| Sbjct 207954 CATATGTCGTGATATTGGATGGGGAAGATTACAAATC 207990 >seq95 Length=16868 Score = 109 bits (120), Expect = 7e-19 Identities = 165/227 (73%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 65970 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA-TCCAGGACATTCATCCGG 66028 |||||||| || |||| ||| ||||| || | | || ||||||||| ||| ||| Sbjct 6552 GTATACAAGTCATCAAACTTGTCACCCCAG-CAGTCTGAAAGTCCAGGACAAGCATGCGG 6610 Query 66029 ACACATCAACGACCAC-TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 66087 |||||||| |||| ||| ||| | ||||||||| |||||||| ||||||||||||| Sbjct 6611 ACACATCAGACTCCACATCT-CGTTGTTCTTCACTCGCTTCATAAATAGATCAGGAATCC 6669 Query 66088 AAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 66146 | ||||| ||| || | ||| | | || | |||||| || || || || || || || Sbjct 6670 ACAGAGC-ATAGAAAAGATCCCGAGCTCGAATTTCCTCTTTCCCCGTGTTTTTCTTCAGG 6728 Query 66147 TCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGC 66193 || || ||| | | | ||| |||||| ||||||| || ||||| Sbjct 6729 TCAAGAAACTCAAACACATCTGCATGCCAGGGTTCCAGATAAATGGC 6775 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 64905 CTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATA 64964 |||||| |||| || |||||| ||| | ||| || |||| || || ||||| || Sbjct 2507 CTCCATGCGTAGAAGTGCATAGACGTCAATTTTCCGTAGTTCGGTTCGGCAATATGAATG 2566 Query 64965 TTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTC 65024 |||| || || || || || ||||| || || | ||| ||||||||||| || || || Sbjct 2567 TTCAGGGACTGGCTCTGGTCAATGAACGCACCTCGGTCAGCAGCCATTTTGATTATAGTT 2626 Query 65025 TTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 || || || |||||||| | ||||| || | ||||||||| || |||| Sbjct 2627 TTCTGCGGGATTTCCCACACCGTTTTGTAGAGGGCCTTAATATCATCCGGAA 2678 Score = 95.1 bits (104), Expect = 2e-14 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 65415 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 65474 ||| | || || || ||||| || ||||| || ||||||||||| ||||| || || Sbjct 4429 CCTTCGTAAGTCTCATATGGGCCCCGTTTCTCGGCAAGTTCACAACTTGCCTCCAAAGCC 4488 Query 65475 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 65534 ||||| ||||| || || || |||| || |||||| | ||||| || || |||||| Sbjct 4489 CCGTAGTAAATAGTCTCAAATATCTGCTGATTTAGCTTCTGTGCCTCTTCACTGTCAAAT 4548 Query 65535 GGATAAT-TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 65584 || |||| | ||| || ||||| ||||| || ||||| | ||||| || Sbjct 4549 GG-TAATCTCAAGCAGATGAACGCATCTGCCAAACCTTGTATGCCAATGCC 4598 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 66210 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 66269 || || || || || || | |||| || ||||| ||||||||||||||||| || | | Sbjct 7354 TTATTGCCACCTTGGTCCACATATCGTGCTGTGTTGTTATAAACTCTCAACATAGGCACA 7413 Query 66270 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTA 66329 || ||||| || || |||||||| || | ||||| || | || || |||||| Sbjct 7414 ATGCCATTCGAAGTGCCATTGGTGCCAGCTATATACGAGCCTGTAGCGCGGATATTATGG 7473 Query 66330 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 66389 || || || ||||| || || ||||| || | ||| ||| |||| | || ||| Sbjct 7474 ATGTGGAGTCCGATTCCACCAGCAGACTTAGAAATCAGTGCACATTGTTTCAGTGTGTCA 7533 Query 66390 TAGATGCCCTCTATACTATCATCCATCAT 66418 || || ||||| || || || ||| |||| Sbjct 7534 TAAATTCCCTCAATGCTGTCGTCCTTCAT 7562 Score = 84.2 bits (92), Expect = 3e-11 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttG-TTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATA 66857 ||||||| ||| |||||| |||| || |||||||| || ||||| ||||| || || | | Sbjct 10573 CACTAAA-AGTCTTTTTGGTTTCCTTATGTAGATTGGAGACGGCAATTCTGGCTGCAAGA 10631 Query 66858 ATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCC 66917 || || ||||||||||| | || || || || || | || || ||||| | ||| Sbjct 10632 ATCGCGTAATCCGGATGCTTGGTTGTCATGGTAGCAGCAGTCTCAGCGGCCAGGTTATCC 10691 Query 66918 AATTCTACCGTTGTTACTCC 66937 | ||| || |||||||| || Sbjct 10692 AGTTCCACTGTTGTTACACC 10711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657912311660080