Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq513 143 4e-29 seq899 100 4e-16 seq95 98.7 1e-15 >seq513 Length=652068 Score = 143 bits (158), Expect = 4e-29 Identities = 169/228 (74%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 ||||||||| ||| ||||| ||| || ||||| |||||||| || || ||||| | Sbjct 206546 CCTCGTCTCGTGAAATAAGTTCATTGCTGAAGGTGAGACCGGGCATAAGTCCCCGCTTCT 206605 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| || || | ||||| ||||| |||||||| ||||| ||||| ||||| | Sbjct 206606 TTAACCAGAAGATAGCAGCAAAACTTCCAGAGAAGAAGATACCTTCCACTGCAGCAAACG 206665 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGG 50158 |||| | |||||| ||| | | || | || || |||||||| | |||||||| | Sbjct 206666 CAACCACTCTCTCACCAAACGTCGCAGTTTCGTGCGCTATCCACTGAAGGGCCCAATCTG 206725 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 50206 |||||||||| ||||| |||||||| || | ||| ||||| | |||| Sbjct 206726 CCTTCTTTTTCACACACGGCATCGTCTCAACGGCGTTAAATAAGTAGT 206773 Score = 109 bits (120), Expect = 8e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 50230 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 50289 || ||||| ||||| | ||||||||||| ||||| | ||||| || || |||||||| Sbjct 207377 TAGGTATCAATCAACAAGCTATACATTTCTGAATGGACATTTTCCATCGCTATCTGAAAG 207436 Query 50290 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTT 50349 || ||||| ||||| || || || | || ||||| | |||| || | ||||| Sbjct 207437 CCATAGAAGCATCTTGCTTCTGTTACTTGTACTTCCTGGCTGAATCTCTCTACCAAATTC 207496 Query 50350 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTT 50409 ||||| || ||||| || ||||||||||| || | |||||| ||||||||| || Sbjct 207497 TCATTAACAATTCCATCTGAAGCTGCAAAAAATGCTAGTACATGGGAGATAAAATGTCTT 207556 Query 50410 TCGTTGGGTGTTAGTTTATTCCAAT 50434 || | ||| || | ||||||| Sbjct 207557 TCATCTTCTGTCAGCATGTTCCAAT 207581 Score = 98.7 bits (108), Expect = 1e-15 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 50446 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 50505 || |||| ||| ||||||||| | |||||||| || || |||||||| || ||||| | | Sbjct 207894 TTGGATAAATCCACTTCTTCCGCAGTCCAAAACGAAGCTTCTGCCTTCTTGTACATTTGC 207953 Query 50506 CAGATGTCATGATATTGGATTGGGAAAATAACAAATC 50542 || ||||| ||||||||||| ||||| || ||||||| Sbjct 207954 CATATGTCGTGATATTGGATGGGGAAGATTACAAATC 207990 >seq899 Length=978777 Score = 100 bits (110), Expect = 4e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 97749 GCAAACGAAGGAAAAATAGTTATAGTAGCCGCACTTGATGGGACATTTCAACGTAAACCG 97808 |||||| || || ||||| || |||| ||||||||||| |||||||| || | Sbjct 355906 GCAAACCTTGGTAAGATAGTGATTATAGCAGCACTTGATGGTACATTTCAGCGAGTTGGG 355847 Query 97809 TTTAATAATATCTTGAATCTTATTCCATTATCTGAAATGGTGGTAAAACTAACTGCTGTG 97868 ||| || || ||||| |||||||| || |||||| ||||| ||||| | |||||| Sbjct 355846 TTTGGGAACATTTTGAACCTTATTCCTTTGGCTGAAAATGTGGTGAAACTTAATGCTGTC 355787 Query 97869 TGTATGAAATGCTTTAAGGAAGCTTCCTTT 97898 || |||| |||||| | |||||||| ||| Sbjct 355786 TGCATGATATGCTTCAGAGAAGCTTCTTTT 355757 >seq95 Length=16868 Score = 98.7 bits (108), Expect = 1e-15 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 78784 CTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATA 78843 |||||| ||||||| |||||| ||| | ||| || |||| || || ||||| || Sbjct 2507 CTCCATGCGTAGAAGTGCATAGACGTCAATTTTCCGTAGTTCGGTTCGGCAATATGAATG 2566 Query 78844 TTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTC 78903 |||| || || || || || ||||| || || | ||| ||||||||||| || || || Sbjct 2567 TTCAGGGACTGGCTCTGGTCAATGAACGCACCTCGGTCAGCAGCCATTTTGATTATAGTT 2626 Query 78904 TTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 || || || |||||||| | ||||| || | ||||||||| || |||| Sbjct 2627 TTCTGCGGGATTTCCCACACCGTTTTGTAGAGGGCCTTAATATCATCCGGAA 2678 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 || || || || || || | |||| || ||||| ||||||||||||||||| || | | Sbjct 7354 TTATTGCCACCTTGGTCCACATATCGTGCTGTGTTGTTATAAACTCTCAACATAGGCACA 7413 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208 || ||||| || || |||||||| || | ||||| || | || || |||||| Sbjct 7414 ATGCCATTCGAAGTGCCATTGGTGCCAGCTATATACGAGCCTGTAGCGCGGATATTATGG 7473 Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268 || || || ||||| || || ||||| || | ||| ||| |||| | || ||| Sbjct 7474 ATGTGGAGTCCGATTCCACCAGCAGACTTAGAAATCAGTGCACATTGTTTCAGTGTGTCA 7533 Query 80269 TAGATGCCCTCTATGCTATCATCAATCAT 80297 || || ||||| ||||| || || |||| Sbjct 7534 TAAATTCCCTCAATGCTGTCGTCCTTCAT 7562 Score = 89.7 bits (98), Expect = 7e-13 Identities = 134/185 (72%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 79890 TCCAGGACATTCGTCAGGACACATCAACGACCAC-TCTCCATCATCCTTTACTCGTTTCA 79948 ||||||||| | | |||||||||| |||| |||| | || || ||||| |||| Sbjct 6593 TCCAGGACAAGCATGCGGACACATCAGACTCCACATCTCGTTGTTC-TTCACTCGCTTCA 6651 Query 79949 TAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTT 80007 |||| |||||||||||||| ||||| ||| || ||||| | | || | ||||| || Sbjct 6652 TAAATAGATCAGGAATCCACAGAGC-ATAGAAAAGATCCCGAGCTCGAATTTCCTCTTTC 6710 Query 80008 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 80067 || || || || || || || || ||| | | | ||| | |||||| ||||||| || Sbjct 6711 CCCGTGTTTTTCTTCAGGTCAAGAAACTCAAACACATCTGCATGCCAGGGTTCCAGATAA 6770 Query 80068 ATGGC 80072 ||||| Sbjct 6771 ATGGC 6775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717984527165680