Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq583 102 6e-17 seq1183 82.4 6e-11 >seq583 Length=527131 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42920 CCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAA 42979 |||| || | ||| ||||| ||||| || || | || || ||||| || || ||||| | Sbjct 233048 CCTTCTGAATATTATAATCCGACAACGTGCGACCATCTTCTAATTGCTTCCCAGCAAAGA 232989 Query 42980 TCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGC 43039 ||||||||||||| || | || | ||||||||| || ||| | ||||| | Sbjct 232988 TCAATCGCTGTTGGTCCGGTGGGATACCTTCTTTATCTTGAATCTTAGCCTTGACATTTT 232929 Query 43040 CAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAA 43099 | | || || ||||| || || | ||||||||||| || ||||| ||||| || | Sbjct 232928 CTATGGTATCCGACGCCTCAACTTCGAGGGTTATAGTTTTACCCGTTAGGGTTTTTACGA 232869 Query 43100 AAATTTGCATT 43110 ||||||||||| Sbjct 232868 AAATTTGCATT 232858 >seq1183 Length=31732 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/205 (70%), Gaps = 5/205 (2%) Strand=Plus/Plus Query 42917 TCTCCTTT-TGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCA 42975 || ||||| || | |||||| || || | |||||| || || | ||| || || || ||| Sbjct 17234 TCACCTTTCTGTATATTGTAGTCAGAGAGTGTACGATCATCTTTCAACTGCTTTCCTGCA 17293 Query 42976 AAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG-CT-GATCAACTCTTTGA 43033 ||| | ||||| |||||||| | || | ||||| ||||| || ||| | ||| | Sbjct 17294 AAATTTAATCGTTGTTGATCAGAGGGAATTCCTTCCTTTTCCTCTAGATGT--TGTTTCA 17351 Query 43034 CTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTT 43093 | | ||| ||||| || || || || | || |||||||| || ||||||| Sbjct 17352 CGTTTTCAATGGTGTCTGAAGGTTCAACTTCAAGAGTACAGGTTTTTCCAGTGAGAGTTT 17411 Query 43094 TCACAAAAATTTGCATTTTCTTAAT 43118 ||||||| ||||||||| | | ||| Sbjct 17412 TCACAAAGATTTGCATTCTGTCAAT 17436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381222436860396