Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq513 140 4e-28 seq95 105 9e-18 >seq513 Length=652068 Score = 140 bits (154), Expect = 4e-28 Identities = 168/228 (74%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| |||| ||| | ||| ||| || ||||| |||||||| || || ||||| | Sbjct 206546 CCTCGTCTCGTGAAATAAGTTCATTGCTGAAGGTGAGACCGGGCATAAGTCCCCGCTTCT 206605 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| || |||| ||||| |||||| |||||||| ||||| ||||| ||||| | Sbjct 206606 TTAACCAGAAGATAGCAGCAAAACTTCCAGAGAAGAAGATACCTTCCACTGCAGCAAACG 206665 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATG---TATCCACTTTTGAGCCCAATCGG 42263 ||| | |||||| ||| | ||| | || || |||||||| | |||||||| | Sbjct 206666 CAACCACTCTCTCACCAAACGTCGCAGTTTCGTGCGCTATCCACTGAAGGGCCCAATCTG 206725 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 42311 |||||||||| ||||| |||||||| || | ||| ||||| | |||| Sbjct 206726 CCTTCTTTTTCACACACGGCATCGTCTCAACGGCGTTAAATAAGTAGT 206773 Score = 113 bits (124), Expect = 6e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 || ||||| ||||| | ||||||||||||||||| | ||||| || || |||||||| Sbjct 207377 TAGGTATCAATCAACAAGCTATACATTTCTGAATGGACATTTTCCATCGCTATCTGAAAG 207436 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTT 42454 || ||||| ||||| || || || || |||||||| | |||| || | ||||| Sbjct 207437 CCATAGAAGCATCTTGCTTCTGTTACTTGTACTTCCTGGCTGAATCTCTCTACCAAATTC 207496 Query 42455 TCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 42514 || || || ||||| || ||||||||||| || | |||||| ||||||| | || Sbjct 207497 TCATTAACAATTCCATCTGAAGCTGCAAAAAATGCTAGTACATGGGAGATAAAATGTCTT 207556 Query 42515 TCGTC 42519 || || Sbjct 207557 TCATC 207561 Score = 89.7 bits (98), Expect = 7e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 42551 TTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTC 42610 || |||| ||| |||||||| | |||||||| || ||||||||||| || ||||| | | Sbjct 207894 TTGGATAAATCCACTTCTTCCGCAGTCCAAAACGAAGCTTCTGCCTTCTTGTACATTTGC 207953 Query 42611 CAGATATCATGATATTGAATTGGGAAAATAACAAATC 42647 || || || |||||||| || ||||| || ||||||| Sbjct 207954 CATATGTCGTGATATTGGATGGGGAAGATTACAAATC 207990 >seq95 Length=16868 Score = 105 bits (116), Expect = 9e-18 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAA-TCCAGGACATTCATTCGGACACATCAATGA 72002 || |||| ||| ||||| ||| | | || ||||||||| ||| ||||||||||| Sbjct 6564 TCAAACTTGTCACCCCA-GCAGTCTGAAAGTCCAGGACAAGCATGCGGACACATCAGACT 6622 Query 72003 CCAC-TCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA- 72060 |||| |||| | || || ||||| |||||||| |||||||||||||| ||||| ||| Sbjct 6623 CCACATCTCGTTGTTC-TTCACTCGCTTCATAAATAGATCAGGAATCCACAGAGC-ATAG 6680 Query 72061 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 72120 || ||||| | | || | ||||| || || || || || || || || || ||| | Sbjct 6681 AAAAGATCCCGAGCTCGAATTTCCTCTTTCCCCGTGTTTTTCTTCAGGTCAAGAAACTCA 6740 Query 72121 ATAATATCAGAATGCCACGGTTCCAAGTATATGGC 72155 | | ||| | |||||| ||||||| || ||||| Sbjct 6741 AACACATCTGCATGCCAGGGTTCCAGATAAATGGC 6775 Score = 104 bits (114), Expect = 3e-17 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 70867 CTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATA 70926 |||||| |||| || |||||| ||| | ||| ||| | || ||||| || ||||| Sbjct 2507 CTCCATGCGTAGAAGTGCATAGACGTCAATTTTCCGTAGTTCGGTTCGGCAATATGAATG 2566 Query 70927 TTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTC 70986 |||| ||||| || || || ||||| || || | ||| ||||||||||| || || || Sbjct 2567 TTCAGGGACTGGCTCTGGTCAATGAACGCACCTCGGTCAGCAGCCATTTTGATTATAGTT 2626 Query 70987 TTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 || || || |||||||| | ||||| || | ||||||||| || |||| Sbjct 2627 TTCTGCGGGATTTCCCACACCGTTTTGTAGAGGGCCTTAATATCATCCGGAA 2678 Score = 95.1 bits (104), Expect = 2e-14 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 71377 CCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCT 71436 ||| | || || || ||||| || ||| ||||| ||||||||||| ||||| || || Sbjct 4429 CCTTCGTAAGTCTCATATGGGCCCCGTTTCTCGGCAAGTTCACAACTTGCCTCCAAAGCC 4488 Query 71437 CCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAAT 71496 || || ||||| || || || |||| || ||| || | ||||| || || |||||| Sbjct 4489 CCGTAGTAAATAGTCTCAAATATCTGCTGATTTAGCTTCTGTGCCTCTTCACTGTCAAAT 4548 Query 71497 GGATAAT-TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACC 71546 || |||| | ||| || ||||| ||||| || ||||| | |||||| || Sbjct 4549 GG-TAATCTCAAGCAGATGAACGCATCTGCCAAACCTTGTATGCCAATGCC 4598 Score = 86.0 bits (94), Expect = 8e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||| ||||| |||| || | | |||||| ||||| | ||||||||||| | | Sbjct 3753 ACCTGAAACTCTCCGGACAGCACACGTCTAGTGTAGATATTTGTTGTATACGGTTCAAAT 3812 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 71252 ||||| || ||||| | |||||||| ||||| || |||||||| || || Sbjct 3813 GACTCGTTGTTTCCAAGGATTTGAGCCGTTGAAGCTGTCGGCATTGGCGC 3862 Score = 86.0 bits (94), Expect = 8e-12 Identities = 147/213 (69%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231 || || || || || || | |||| || ||||| ||||||||||||||||| || | | Sbjct 7354 TTATTGCCACCTTGGTCCACATATCGTGCTGTGTTGTTATAAACTCTCAACATAGGCACA 7413 Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTA 72291 || ||||| || | |||||||| || | ||||| || | || || ||||| Sbjct 7414 ATGCCATTCGAAGTGCCATTGGTGCCAGCTATATACGAGCCTGTAGCGCGGATATT---- 7469 Query 72292 ATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 72347 || ||| || || ||||| || || ||||| || | ||| ||| |||| | || Sbjct 7470 ATGGATGTGGAGTCCGATTCCACCAGCAGACTTAGAAATCAGTGCACATTGTTTCAGTGT 7529 Query 72348 ATCATAGATGCCCTCTATACTATCATCCATCAT 72380 ||||| || ||||| || || || ||| |||| Sbjct 7530 GTCATAAATTCCCTCAATGCTGTCGTCCTTCAT 7562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670873579883120