Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq70 98.7 1e-15 seq950 91.5 1e-13 seq1183 89.7 5e-13 >seq70 Length=429657 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | || | ||| || || | || |||||||| || ||||||||||| Sbjct 142576 CCACCTCGGAGGCGAAGAACCAAGTGCAGGGTTGATTCTTTATGGATGTTGTAATCTGAT 142517 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || || | ||| || |||||| | || | |||||| |||| ||||| Sbjct 142516 AAGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAAATTAAACGTTGTTGATGAGGAGGA 142457 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||||||| |||| | | ||| || ||||| | ||||| ||| Sbjct 142456 ATTCCTTCCTTGTCCTGAATTTTTCGTTTCAAGTTTTCAACGGTGTCAGATGGTTCAACT 142397 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | || || || || | || || || || | |||||| Sbjct 142396 TCAAGAGTAATGGTTTTTCCAGTGAGAGTCTTCACAAAGACTTGCAT 142350 >seq950 Length=836093 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/205 (71%), Gaps = 5/205 (2%) Strand=Plus/Plus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTT 143039 ||| | ||| |||||||| || |||||||||| || ||||| || | || || || | Sbjct 300672 ATGGAGTGTTGATTCTTTCTGGTTGTTGTAATC---CAGTGTGCGTCCA-TCCTCCAGCT 300727 Query 143040 GTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTT 143099 | || |||||| ||||||| || || ||||| || || || ||||||||||| ||| | Sbjct 300728 GCTTGCCAGCAAAGATCAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCT 300787 Query 143100 TTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGG 143159 | ||| | | || | ||| || | | |||||||| | || | |||||||| | Sbjct 300788 TGGCTTTAACATTCTCAATCGTATCAGAAGCCTCTACTTCCAATGTGATTGTCTTGCCTG 300847 Query 143160 TCAATGTTTTTACGAATATTTGCAT 143184 ||| || || || || || ||||| Sbjct 300848 TCAGAGTCTTAACAAAGATCTGCAT 300872 >seq1183 Length=31732 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || || || | || |||||||| || ||||||||||| Sbjct 15653 CCACCACGCAGACGCAATACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCTGAT 15712 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | ||| || |||||| |||| || || ||||| || || || Sbjct 15713 AAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGCTCAGGGGGG 15772 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| | |||| ||||| | || | || || | || ||||| Sbjct 15773 ATACCTTCCTTGTCCTGCAGCTTTTTCTTTAGATTCTCAATGGTATCAGCTGGCTCTACC 15832 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| || |||| || || ||||| || ||||| Sbjct 15833 TCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 15879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506813736375840