Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq583 104 2e-17 seq70 98.7 7e-16 seq950 93.3 3e-14 seq623 89.7 4e-13 seq1183 87.8 1e-12 seq352 82.4 6e-11 >seq583 Length=527131 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||||||||| || ||||| | ||||| || |||||||| ||| || |||||||| Sbjct 233013 TCTTCTAATTGCTTCCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCTTCTTTA 232954 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || ||| || ||| ||| ||||||||||||| || || || | ||| || Sbjct 232953 TCTTGAATCTTAGCCTTGACATTTTCTATGGTATCCGACGCCTCAACTTCGAGGGTTATA 232894 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| || || |||||||| ||||||||||| Sbjct 232893 GTTTTACCCGTTAGGGTTTTTACGAAAATTTGCAT 232859 >seq70 Length=429657 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || ||||| || ||||| || ||||||||||| || | | | || || Sbjct 142559 AACCAAGTGCAGGGTTGATTCTTTATGGATGTTGTAATCTGATAAGGTGCGGCCATCCTC 142500 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||||| |||||||| | || ||||||||||| | ||||||||||| ||||| Sbjct 142499 CAATTGCTTGCCAGCAAAAATTAAACGTTGTTGATGAGGAGGAATTCCTTCCTTGTCCTG 142440 Query 15274 AATTTTGCTCTTTACAA--TTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 |||||| || || ||| |||| | ||| || ||| || || | ||||||||| Sbjct 142439 AATTTT--TCGTTTCAAGTTTTCAACGGTGTCAGATGGTTCAACTTCAAGAGTAATGGTT 142382 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||| | |||||| Sbjct 142381 TTTCCAGTGAGAGTCTTCACAAAGACTTGCAT 142350 >seq950 Length=836093 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||||| | || | || | |||||| || || || || || || || ||||| Sbjct 302150 TGCCACCTCGAAGCCTGAGGACGAGATGAAGTGTAGATTCCTTCTGGATATTATAATCAG 302209 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || ||| | || || | || |||||||| | |||| || || ||||| || Sbjct 302210 AGAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGTG 302269 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||||||||| ||||| || ||| || ||| | || || ||||| ||| | Sbjct 302270 GAATTCCTTCCTTGTCTTGGATCTTGGCTTTCACATTCTCAATCGTATCAGATGCTTCCA 302329 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | ||||| |||||||| || || ||||||||||| || ||||| ||||| Sbjct 302330 CTTCTAAAGTAATGGTCTTGCCAGTCAGAGTTTTCACGAAAATCTGCAT 302378 Score = 87.8 bits (96), Expect = 1e-12 Identities = 142/204 (70%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || ||||| || |||||||||| || | | | || || | || Sbjct 300672 ATGGAGTGTTGATTCTTTCTGGTTGTTGTAATCC---AGTGTGCGTCCATCCTCCAGCTG 300728 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||||| | |||| || ||||| || |||||||||||||||||| ||| || Sbjct 300729 CTTGCCAGCAAAGATCAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTT 300788 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | || ||| | || || ||||| | ||||| || || || || || || ||||| Sbjct 300789 GGCTTTAACATTCTCAATCGTATCAGAAGCCTCTACTTCCAATGTGATTGTCTTGCCTGT 300848 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 |||||| || ||||| || ||||| Sbjct 300849 CAGAGTCTTAACAAAGATCTGCAT 300872 >seq623 Length=111817 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| || || || || || | || ||||||||||| || ||||||||||| ||| Sbjct 110365 TCTTCCAACTGCTTTCCTGCAAAAATTAAACGTTGTTGATCAGGAGGAATTCCTTCCTTG 110424 Query 15269 T-CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 | | || ||||||| || || |||| ||||| || |||| || || | |||| Sbjct 110425 TCCTGAATTTTTGCT-TTAACGTTTTCAATGGTGTCAGACGTTTCCACTTCAAGAATAAT 110483 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATA-AAATTTTAATAC 15386 |||||| || || ||||| || ||||| |||||||| || |||| ||| || ||||| Sbjct 110484 GGTTTTTCCAGTGAGAGTCTTCACAAAGATTTGCAT-CCTGTCAATACAAAATTCAATAC 110542 Query 15387 TT 15388 || Sbjct 110543 TT 110544 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| ||||| || ||||| || ||||||||||| || | | | || || Sbjct 107665 AACCAAATGCAGGGTTGATTCTTTCTGGATGTTGTAATCTGATAAGGTACGGCCATCCTC 107724 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||||| |||||||| | || | || || ||| | || || ||||| ||||| Sbjct 107725 CAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGGCCAGGAGGGATACCTTCCTTGTCCTG 107784 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATC-GCTATTTTCTACATCTAAGGTAATGGTT 15331 || |||||| || || | || |||||||| ||| ||||| || | || ||||| Sbjct 107785 GATCTTTGCT-TTCACGTTCTCAATGGTATCAGCT-GGCTCTACCTCCAGAGTGATGGTC 107842 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||||||| || || |||||||| ||||| Sbjct 107843 TTCCCTGTCAGGGTCTTCACAAAAATCTGCAT 107874 >seq1183 Length=31732 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || |||||||| ||||| || ||||||||||| || | | | ||| Sbjct 15668 AATACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCTGATAAGGTGCGGCCATCT 15727 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC- 15270 || ||||| |||||||| | || | || || || || || || ||||| ||||| Sbjct 15728 TCCAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGCTCAGGGGGGATACCTTCCTTGTCC 15787 Query 15271 -ACAAATTTTGCTCTTTACAATTTCTATGGTATC-GCTATTTTCTACATCTAAGGTAATG 15328 || |||| |||||| | | || |||||||| ||| ||||| || | || ||| Sbjct 15788 TGCAGCTTTT--TCTTTAGATTCTCAATGGTATCAGCT-GGCTCTACCTCCAGAGTGATG 15844 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| || || || ||||| ||||| Sbjct 15845 GTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 15879 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || ||||| || |||| || ||||||||||| || | | | ||||| Sbjct 15442 AACCAAGTGCAGGGTTGATCCTTTCTGGATGTTGTAATCTGATAAGGTGCGGCCATCTTC 15501 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC--A 15271 ||||| |||||||| | || | || || || || || || ||||| ||||| Sbjct 15502 CAATTGCTTGCCAGCAAACATAAGTCGCTGCTGCTCAGGGGGGATACCTTCCTTGTCCTG 15561 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATC-GCTATTTTCTACATCTAAGGTAATGGT 15330 || |||| |||||| | | || |||||||| ||| ||||| || | || ||||| Sbjct 15562 CAGCTTTT--TCTTTAGATTCTCAATGGTATCAGCT-GGCTCTACCTCCAGAGTGATGGT 15618 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||||||| || || |||||||| |||||| Sbjct 15619 CTTCCCTGTCAGGGTCTTCACAAAAATCTGCATA 15652 >seq352 Length=269356 Score = 82.4 bits (90), Expect = 6e-11 Identities = 154/220 (70%), Gaps = 10/220 (5%) Strand=Plus/Plus Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAA-TTCT-CG--CGTCTTCTAATTGTTTGCCAGCG 15229 |||| ||||| ||||| || |||| || | || | ||||| || || || || || Sbjct 29305 CTTTCTGTATATTGTAGTC----AGAAATTGTACGACCATCTTCCAACTGCTTTCCTGCA 29360 Query 15230 TATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACA 15289 | || ||||||||||| || ||||||||||| ||||| | ||||| || || Sbjct 29361 AAAATTAAACGTTGTTGATCAGGGGGAATTCCTTCCTTGTCGTTGAGTTTGCGTTTCACG 29420 Query 15290 ATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTT 15349 ||| ||||| || |||| || || | |||| |||||| || || ||||| || Sbjct 29421 TCTTCAATGGTGTCAAACGTTTCCACTTCAAGAGTAACGGTTTTTCCAGTGAGAGTCTTC 29480 Query 15350 ACAAAAATTTGCATATTTGAAAATA-AAATTTTAATACTT 15388 ||||| |||||||| || |||| ||| || ||||||| Sbjct 29481 ACAAAGATTTGCAT-CCTGTCAATACAAAATTCAATACTT 29519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362039442063942