Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq70 93.3 3e-14 seq1183 89.7 3e-13 seq583 89.7 3e-13 seq352 87.8 1e-12 >seq70 Length=429657 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| |||| || || ||||| || || |||||||| || || || | || ||| Sbjct 142558 ACCAAGTGCAGGGTTGATTCTTTATGGATGTTGTAATCTGATAAGGTGCGGCCATCCTCC 142499 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 |||||||| ||| ||| ||||||||||| || | | || || ||||| || || | Sbjct 142498 AATTGCTTGCCAGCAAAAATTAAACGTTGTTGATGAGGAGGAATTCCTTCCTTGTCCTGA 142439 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || |||| | ||| || ||||| |||| ||| || ||||| || |||||| Sbjct 142438 ATTTTTCGTTTCAAGTTTTCAACGGTGTCAGATGGTTCAACTTCAAGAGTAATGGTTTTT 142379 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || || || | |||||| Sbjct 142378 CCAGTGAGAGTCTTCACAAAGACTTGCAT 142350 >seq1183 Length=31732 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 33180 CTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATA 33239 |||| ||||||||||| ||||| | | | | || | ||| |||||||| ||| Sbjct 17238 CTTTCTGTATATTGTAGTCAGAGAGTGTACGATCATCTTTCAACTGCTTTCCTGCAAAAT 17297 Query 33240 TTAAACGTTGCTGGTCCGTGGGTATGCCTT-CTTTTTCGCTAATCGCCTGTTTTACTGTT 33298 |||| ||||| || || | ||| || |||| ||||| | ||| | ||||| || || Sbjct 17298 TTAATCGTTGTTGATCAGAGGGAATTCCTTCCTTTTCCTCTAGATG-TTGTTTCACGTTT 17356 Query 33299 TGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACG 33358 | ||| ||||| |||| ||| || ||||| |||||||| || |||||||| || Sbjct 17357 TCAATGGTGTCTGAAGGTTCAACTTCAAGAGTACAGGTTTTTCCAGTGAGAGTTTTCACA 17416 Query 33359 AAAATTTGCAT 33369 || |||||||| Sbjct 17417 AAGATTTGCAT 17427 >seq583 Length=527131 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/191 (71%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 33182 TTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATT 33241 || || ||||| ||||| ||||| || | || || |||||||| ||| ||| || Sbjct 233046 TTCTGAATATTATAATCCGACAACGTGCGACCATCTTCTAATTGCTTCCCAGCAAAGATC 232987 Query 33242 AAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTT 33298 || || || ||||||| || || |||||||| || |||| |||| | || || Sbjct 232986 AATCGCTGTTGGTCCGGTGGGATACCTTCTTTATCTTGAATCTTAGCCT---TGACATTT 232930 Query 33299 TGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACG 33358 | || || || | | ||| || || ||||| ||||| ||||| || ||||||||| Sbjct 232929 TCTATGGTATCCGACGCCTCAACTTCGAGGGTTATAGTTTTACCCGTTAGGGTTTTTACG 232870 Query 33359 AAAATTTGCAT 33369 ||||||||||| Sbjct 232869 AAAATTTGCAT 232859 >seq352 Length=269356 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/194 (71%), Gaps = 8/194 (4%) Strand=Plus/Plus Query 33180 CTTTTTGTATATTGTAATCAGACAAATTGA--GTTGGTCATCCAATTGCTTTCCACTAAA 33237 |||| ||||||||||| ||||| ||||| | || ||||| |||||||| ||| Sbjct 29305 CTTTCTGTATATTGTAGTCAGA--AATTGTACGACCATCTTCCAACTGCTTTCCTGCAAA 29362 Query 33238 TATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAA--TCGCCTGTTTTACT 33295 ||||||||||| || || | ||| || ||||| || ||| | | | || |||| || Sbjct 29363 AATTAAACGTTGTTGATCAGGGGGAATTCCTTCCTTGTCGTTGAGTTTGC--GTTTCACG 29420 Query 33296 GTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTT 33355 || ||| ||||| | || || || ||||| | |||||||| || ||||| || Sbjct 29421 TCTTCAATGGTGTCAAACGTTTCCACTTCAAGAGTAACGGTTTTTCCAGTGAGAGTCTTC 29480 Query 33356 ACGAAAATTTGCAT 33369 || || |||||||| Sbjct 29481 ACAAAGATTTGCAT 29494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318654589900476