Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq583 96.9 2e-15 seq623 91.5 1e-13 seq70 84.2 2e-11 >seq583 Length=527131 Score = 96.9 bits (106), Expect = 2e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 43934 TTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATC 43993 || |||||||||||||| || || |||| || ||||| || || ||||| ||| Sbjct 233046 TTCTGAATATTATAATCCGACAACGTGCGACCATCTTCTAATTGCTTCCCAGCAAAGATC 232987 Query 43994 AACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCA 44053 || || || |||||| | || | ||||||||||||| ||| || ||||| | | Sbjct 232986 AATCGCTGTTGGTCCGGTGGGATACCTTCTTTATCTTGAATCTTAGCCTTGACATTTTCT 232927 Query 44054 ACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAAT 44113 | ||||| | || ||| || |||| || || |||||||| |||| || || || || Sbjct 232926 ATGGTATCCGACGCCTCAACTTCGAGGGTTATAGTTTTACCCGTTAGGGTTTTTACGAAA 232867 Query 44114 ATTTGCAT 44121 |||||||| Sbjct 232866 ATTTGCAT 232859 >seq623 Length=111817 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 43932 CTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATA 43991 |||| || ||||| || || | | ||| |||| ||||| || ||||||||||| | Sbjct 110330 CTTTCTGTATATTGTAGTCAGAAAGTGTACGACCATCTTCCAACTGCTTTCCTGCAAAAA 110389 Query 43992 TCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAG 44051 | || ||||| || || |||| | ||||| || || ||||||| ||| || | Sbjct 110390 TTAAACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTGAATTTTTGCTTTAACGTTTT 110449 Query 44052 CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAA 44111 ||| || || | || ||||| || | |||| ||||| || || | ||||||||||| Sbjct 110450 CAATGGTGTCAGACGTTTCCACTTCAAGAATAATGGTTTTTCCAGTGAGAGTCTTCACAA 110509 Query 44112 ATATTTGCAT 44121 | |||||||| Sbjct 110510 AGATTTGCAT 110519 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| || || ||||| || || || ||||| ||| ||| |||| ||| Sbjct 107666 ACCAAATGCAGGGTTGATTCTTTCTGGATGTTGTAATCTGATAAGGTACGGCCATCCTCC 107725 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 ||||| || || ||||| || | || |||||| | |||| | |||||| || || Sbjct 107726 AATTGCTTGCCAGCAAAGATAAGTCGCTGCTGGCCAGGAGGGATACCTTCCTTGTCCTGG 107785 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || ||| ||| || | ||| ||||| || ||||| || || | || || || || Sbjct 107786 ATCTTTGCTTTCACGTTCTCAATGGTATCAGCTGGCTCTACCTCCAGAGTGATGGTCTTC 107845 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || | ||||||||||| || |||||| Sbjct 107846 CCTGTCAGGGTCTTCACAAAAATCTGCATG 107875 >seq70 Length=429657 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || || ||||| || || || ||||| ||| || |||| ||| Sbjct 142558 ACCAAGTGCAGGGTTGATTCTTTATGGATGTTGTAATCTGATAAGGTGCGGCCATCCTCC 142499 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 ||||| || || ||||| || || ||||| || | |||| | ||||| || || | Sbjct 142498 AATTGCTTGCCAGCAAAAATTAAACGTTGTTGATGAGGAGGAATTCCTTCCTTGTCCTGA 142439 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 |||||| |||| | | |||| || || | || || || || | ||||| ||||| Sbjct 142438 ATTTTTCGTTTCAAGTTTTCAACGGTGTCAGATGGTTCAACTTCAAGAGTAATGGTTTTT 142379 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | |||||||||||| | |||||| Sbjct 142378 CCAGTGAGAGTCTTCACAAAGACTTGCAT 142350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354640698197976