Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq623 145 2e-29 seq583 143 6e-29 seq950 141 2e-28 seq70 122 2e-22 seq1183 120 7e-22 seq394 118 2e-21 seq33 109 1e-18 seq352 104 5e-17 >seq623 Length=111817 Score = 145 bits (160), Expect = 2e-29 Identities = 146/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 ||||||| ||||| |||||||| || || | ||| ||||| | || ||||| ||||||| Sbjct 110330 CTTTCTGTATATTGTAGTCAGAAAGTGTACGACCATCTTCCAACTGCTTTCCTGCAAAAA 110389 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 ||| | |||||||||||||| |||||||| || |||||||| |||||||| || |||| Sbjct 110390 TTAAACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTGAATTTTTGCTTTAACGTTTT 110449 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | ||| || | ||| || || || |||| || || ||||| || || || |||| Sbjct 110450 CAATGGTGTCAGACGTTTCCACTTCAAGAATAATGGTTTTTCCAGTGAGAGTCTTCACAA 110509 Query 104550 ATATCTGCAT 104559 | || ||||| Sbjct 110510 AGATTTGCAT 110519 Score = 138 bits (152), Expect = 3e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || |||| || | ||| || | ||| | || ||||||||||| || || || || ||| Sbjct 107648 CCACCTCGGAGGCGAAGAACCAAATGCAGGGTTGATTCTTTCTGGATGTTGTAATCTGAT 107707 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | || | || || || | ||| || |||||||| || || | ||| || ||||||| Sbjct 107708 AAGGTACGGCCATCCTCCAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGGCCAGGAGGG 107767 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC-GCTAGGTTCTAC 104511 || ||||| || ||||| ||||||||||| || || || | |||||| ||| || ||||| Sbjct 107768 ATACCTTCCTTGTCCTGGATCTTTGCTTTCACGTTCTCAATGGTATCAGCT-GGCTCTAC 107826 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || ||||| || || || || || ||||| |||||||| Sbjct 107827 CTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAAATCTGCAT 107874 >seq583 Length=527131 Score = 143 bits (158), Expect = 6e-29 Identities = 145/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 |||||||||||||| || || | || | ||| ||||||| ||| || |||||||| || Sbjct 233046 TTCTGAATATTATAATCCGACAACGTGCGACCATCTTCTAATTGCTTCCCAGCAAAGATC 232987 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 | | |||||| || || || || ||||||||||| |||||||| || || ||||||||| Sbjct 232986 AATCGCTGTTGGTCCGGTGGGATACCTTCTTTATCTTGAATCTTAGCCTTGACATTTTCT 232927 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAAT 104551 | |||||| | || || || || || ||||| ||||| || || |||||||| || Sbjct 232926 ATGGTATCCGACGCCTCAACTTCGAGGGTTATAGTTTTACCCGTTAGGGTTTTTACGAAA 232867 Query 104552 ATCTGCATT 104560 || |||||| Sbjct 232866 ATTTGCATT 232858 >seq950 Length=836093 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | |||||| |||||||| |||||||| || || || |||| || || Sbjct 297493 AAGCACAAGGTGGAGTGTAGACTCTTTCTGGATATTATAATCTGAGAGGGTTCGGCCATC 297552 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || |||||||| || || | ||| || || || || || |||||||| || Sbjct 297553 CTCCAGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTC 297612 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| ||||| || || || | ||||| || ||||| || || ||||| || Sbjct 297613 CTGGATCTTGGCTTTCACGTTCTCAATTGTATCAGAAGCCTCTACTTCCAGAGTAATGGT 297672 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | ||||| |||||||||||||| Sbjct 297673 TTTTCCTGTCAAGGTTTTGACAAATATCTGCAT 297705 Score = 138 bits (152), Expect = 3e-27 Identities = 157/210 (75%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | ||| ||||||||||| | || || || || || | || || || Sbjct 300667 ACCAGATGGAGTGTTGATTCTTTCTGGTTGTTGTAATCC---AGTGTGCGTCCATCCTCC 300723 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || |||||||| || || | |||||||||||| || ||||||||||| |||||| Sbjct 300724 AGCTGCTTGCCAGCAAAGATCAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGA 300783 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| ||||| ||||| || | ||||| || ||||| || | ||| || ||||| Sbjct 300784 ATCTTGGCTTTAACATTCTCAATCGTATCAGAAGCCTCTACTTCCAATGTGATTGTCTTG 300843 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || ||||| ||||||||| Sbjct 300844 CCTGTCAGAGTCTTAACAAAGATCTGCATT 300873 Score = 120 bits (132), Expect = 7e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| ||||| || || || || | ||||||||| ||||| |||||||| || Sbjct 297704 ATGCCACCTCGAAGCCTGAGGACGAGGTGAAGTGTAGATTCCTTCTGGATATTATAATCT 297763 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||| || || || || ||||| |||||||| || || | ||| || || || Sbjct 297764 GAGAGGGTTCGGCCATCCTCCAGCTGTTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGT 297823 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTC 104490 || ||||||||||| ||||| ||||| ||||| || || || Sbjct 297824 GGAATTCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTCTC 297864 Score = 104 bits (114), Expect = 5e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 ||||||| || || ||||| || | ||||| || ||||| || || || |||||||| | Sbjct 301961 CTTTCTGGATGTTGTAGTCCGACAAAGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGA 302020 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | || | ||| || || || || || ||||| || || || ||||| ||||| ||||| | Sbjct 302021 TCAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTGGCTTTCACATTCT 302080 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | ||||| | || || || | ||||| || || || || | ||||| || | Sbjct 302081 CAATCGTATCTGATGCCTCCACTTCCAAAGTAATCGTTTTGCCTGTCAAGGTTTTGACGA 302140 Query 104550 ATATCTGCAT 104559 |||||||||| Sbjct 302141 ATATCTGCAT 302150 >seq70 Length=429657 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| || || || || || |||| || | || || || | ||| || ||| Sbjct 142546 GTTGATTCTTTATGGATGTTGTAATCTGATAAGGTGCGGCCATCCTCCAATTGCTTGCCA 142487 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||||| | ||||||| |||||| |||||||| || |||||||| ||| ||| Sbjct 142486 GCAAAAATTAAACGTTGTTGATGAGGAGGAATTCCTTCCTTGTCCTGAATTTTTCGTTTC 142427 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 | ||||| ||||| || ||||| || || || ||||| || || ||||| || || Sbjct 142426 AAGTTTTCAACGGTGTCAGATGGTTCAACTTCAAGAGTAATGGTTTTTCCAGTGAGAGTC 142367 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| | ||||| Sbjct 142366 TTCACAAAGACTTGCAT 142350 >seq1183 Length=31732 Score = 120 bits (132), Expect = 7e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || || || |||| || | || ||||| | ||| || ||| Sbjct 15683 GTGGATTCTTTCTGGATGTTGTAATCTGATAAGGTGCGGCCATCTTCCAATTGCTTGCCA 15742 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || ||||| || || ||||| || ||||| | |||| ||| Sbjct 15743 GCAAAGATAAGTCGCTGCTGCTCAGGGGGGATACCTTCCTTGTCCTGCAGCTTTTTCTTT 15802 Query 104483 ACATTTTCTACGGTATC-GCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 | ||| || | |||||| ||| || |||||||| || || || ||||| || || || || Sbjct 15803 AGATTCTCAATGGTATCAGCT-GGCTCTACCTCCAGAGTGATGGTCTTCCCTGTCAGGGT 15861 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 15862 CTTCACGAAAATCTGCAT 15879 >seq394 Length=806705 Score = 118 bits (130), Expect = 2e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 104324 TTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTA 104383 || ||| ||| || || || | || ||||| || | ||||||||| || ||||||||| Sbjct 96992 TTCTTTGCTCCTCCCCTCAGGCGTAGAACTAGGTGAAGTGTAGATTCCTTTTGAATATTA 96933 Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 || ||||||| |||| ||| ||||| |||||||||||||||||||| || | ||| ||| Sbjct 96932 TAATCAGATAATGTTCGACCATCTTCAAGTTGTTTTCCAGCAAAAATCAGGCGCTGCTGA 96873 Query 104444 TCAGGAGGTATTCCT 104458 ||||| || || ||| Sbjct 96872 TCAGGGGGGATACCT 96858 Score = 91.5 bits (100), Expect = 3e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| || || |||||||| ||||| |||||||| | ||||| | || |||||| Sbjct 96351 CCTTCCTTGTCTTGAATCTTGGCTTTCACATTTTCAATAGTATCAGATGCCTCAACCTCT 96292 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || ||||||||||| || ||||| |||||||||||| Sbjct 96291 AGGGTGATGGTTTTCCCAGTAAGTGTCTTCACAAAGATCTGCATTTTG 96244 >seq33 Length=49811 Score = 109 bits (120), Expect = 1e-18 Identities = 114/149 (77%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | ||| ||||||||||| | || || || || | ||||| ||| ||| Sbjct 15011 ACCAGATGGAGTGTTGATTCTTTCTGGTTTTTGTAATCTGACAAAGTTCGACCATCT--- 14955 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || |||||||| || || | |||||| || || | |||||||| |||||| || Sbjct 14954 AGATGCTTGCCAGCAAAGATCAGTCGCTGTTGGTCCGGTTGAATTCCTTCCTTATCCCGA 14895 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATC 104499 ||||||||||||||||| || | ||||| Sbjct 14894 ATCTTTGCTTTTACATTCTCAATCGTATC 14866 >seq352 Length=269356 Score = 104 bits (114), Expect = 5e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 ||||||| ||||| |||||||| | || | ||| ||||| | || ||||| ||||||| Sbjct 29305 CTTTCTGTATATTGTAGTCAGAAATTGTACGACCATCTTCCAACTGCTTTCCTGCAAAAA 29364 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGC-TTTTACATTT 104488 ||| | ||||||||||| || |||||||| || || | | ||||| ||| || | | Sbjct 29365 TTAAACGTTGTTGATCAGGGGGAATTCCTTCCTTGTCGTTGA-GTTTGCGTTTCACGTCT 29423 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| || | ||| || || || |||| || || ||||| || || || ||| Sbjct 29424 TCAATGGTGTCAAACGTTTCCACTTCAAGAGTAACGGTTTTTCCAGTGAGAGTCTTCACA 29483 Query 104549 AATATCTGCAT 104559 || || ||||| Sbjct 29484 AAGATTTGCAT 29494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150931312930696