Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq623 120 3e-22 seq70 120 3e-22 seq950 96.9 3e-15 seq352 93.3 4e-14 >seq623 Length=111817 Score = 120 bits (132), Expect = 3e-22 Identities = 124/160 (78%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| ||| ||||| |||| ||||| | ||| ||||| |||||||| ||||| || Sbjct 110364 ATCTTCCAACTGCTTTCCTGCAAAAATTAAACGTTGTTGATCAGGAGGAATTCCTTCCTT 110423 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG-CGTGGTCGACGTCAATCGTGA 94970 ||| | ||||||||| || ||| | | ||||||| ||| || || |||| | | Sbjct 110424 GTCCTGAATTTTTGCTTTAACGTTTTCAATGGTGTCAGACGTT-TCCACTTCAAGAATAA 110482 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 ||||||||||||| ||||| ||||||||||| ||||| || Sbjct 110483 TGGTTTTTCCAGTGAGAGTCTTCACAAAGATTTGCATCCT 110522 >seq70 Length=429657 Score = 120 bits (132), Expect = 3e-22 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATA--GTGTTGGAATCCT 94856 |||||||||| || ||||| || || | ||| ||||| | ||| ||| | ||||| Sbjct 142558 ACCAAGTGCAGGGTTGATTCTTTATGGATGTTGTAATC--TGATAAGGTGCGGCCATCCT 142501 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| || || || |||| ||||| | ||| |||| |||||||| ||||| ||||| | Sbjct 142500 CCAATTGCTTGCCAGCAAAAATTAAACGTTGTTGATGAGGAGGAATTCCTTCCTTGTCCT 142441 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||||||| || | | | || ||||||| | || || |||| || ||||||| Sbjct 142440 GAATTTTTCGTTTCAAGTTTTCAACGGTGTCAGATGGTTCAACTTCAAGAGTAATGGTTT 142381 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 ||||||| ||||| |||||||||| ||||| || Sbjct 142380 TTCCAGTGAGAGTCTTCACAAAGACTTGCATCCT 142347 >seq950 Length=836093 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 ||| | ||| | ||||| || || || | |||||||| | | || ||| | |||| Sbjct 297496 CACAAGGTGGAGTGTAGACTCTTTCTGGATATTATAATC--TGAGAGGGTTCGGCCATCC 297553 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||||||| || || ||||||| | || ||||| ||||| ||||| ||||||||||| Sbjct 297554 TCCAGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCC 297613 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | || || || || ||| | | || |||| || || || | || |||||| Sbjct 297614 TGGATCTTGGCTTTCACGTTCTCAATTGTATCAGAAGCCTCTACTTCCAGAGTAATGGTT 297673 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| || | ||||| ||||| |||||||||| Sbjct 297674 TTTCCTGTCAAGGTTTTGACAAATATCTGCATGC 297707 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 ||||||||||| || | |||||||| | || ||| | |||||||||||| || | Sbjct 302182 GTAGATTCCTTCTGGATATTATAATCAG--AGAGGGTTCGGCCATCCTCCAGCTGCTTGC 302239 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 | ||||||| | || ||||| ||||| ||||| ||||| ||||| | || || || | Sbjct 302240 CAGCAAAGATCAGTCGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCTT 302299 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 | || | | || |||| || || || | || ||||| || ||||| |||| Sbjct 302300 TCACATTCTCAATCGTATCAGATGCTTCCACTTCTAAAGTAATGGTCTTGCCAGTCAGAG 302359 Query 94989 TTTTCACAAAGATCTGCATG 95008 ||||||| || ||||||||| Sbjct 302360 TTTTCACGAAAATCTGCATG 302379 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/125 (76%), Gaps = 4/125 (3%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 ||||||||||| || | |||||||| | | || ||| | ||||||||||||||| | Sbjct 297737 GTAGATTCCTTCTGGATATTATAATC--TGAGAGGGTTCGGCCATCCTCCAGCTGTTTGC 297794 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 | ||||||| | || ||||| ||||| ||||| ||||||||||| | || || || | Sbjct 297795 CAGCAAAGATCAGTCGCTGCTGGTCTGGTGGAATTCCTTCTTTGTCCTGGATCTTGGCTT 297854 Query 94929 TGACG 94933 | ||| Sbjct 297855 TCACG 297859 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||||||| || || ||||||| | || || ||||| || ||||| |||||||| Sbjct 300717 ATCCTCCAGCTGCTTGCCAGCAAAGATCAGTCGCTGTTGATCAGGTGGAATTCCTTCTTT 300776 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || || || || | | || |||| || || || | ||||| Sbjct 300777 GTCCTGAATCTTGGCTTTAACATTCTCAATCGTATCAGAAGCCTCTACTTCCAATGTGAT 300836 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||| || |||||||||||||| Sbjct 300837 TGTCTTGCCTGTCAGAGTCTTAACAAAGATCTGCAT 300872 >seq352 Length=269356 Score = 93.3 bits (102), Expect = 4e-14 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| ||| ||||| |||| ||||| | ||| ||||| || ||||| ||||| || Sbjct 29339 ATCTTCCAACTGCTTTCCTGCAAAAATTAAACGTTGTTGATCAGGGGGAATTCCTTCCTT 29398 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG-CGTGGTCGACGTCAATCGTGA 94970 ||| | | ||| || ||| | | | |||||| ||| || || |||| || | Sbjct 29399 GTCGTTGAGTTTGCGTTTCACGTCTTCAATGGTGTCAAACGTT-TCCACTTCAAGAGTAA 29457 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 |||||||||||| ||||| ||||||||||| ||||| || Sbjct 29458 CGGTTTTTCCAGTGAGAGTCTTCACAAAGATTTGCATCCT 29497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448113777550320