Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1575 150 3e-32 seq2043 143 4e-30 seq55 138 2e-28 >seq1575 Length=228888 Score = 150 bits (166), Expect = 3e-32 Identities = 194/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||||| | |||||| ||||||||||| || || || || || ||||| Sbjct 228124 GCGAAGAGACATCGCAAAGTTCTTCGTGATAACATCCAGGGGATTACGAAACCCGCTATT 228065 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | || ||||||| |||||||| || |||||| | || || | |||||||||| | Sbjct 228064 AGGCGGTTGGCTCGACGTGGTGGTGTTAAGCGTATTTCCGGTCTCATCTATGAAGAAACC 228005 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | || ||||| | || || ||| |||||| | ||||||| | ||| || ||| Sbjct 228004 AGAGGCGTGTTGAAAGTGTTTCTGGAGAACGTTATTCGTGATGCTGTTACCTACACGGAG 227945 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||||| | |||||||| || | |||||| | || ||||||||||| | ||||| Sbjct 227944 CATGCTAAGAGGAAGACTGTTACGGCAATGGATGTGGTGTATGCATTGAAGAGACAAGGT 227885 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | || ||||| || |||||| Sbjct 227884 CGTACTCTGTACGGTTTCGGCGGTTAAT 227857 >seq2043 Length=15996 Score = 143 bits (158), Expect = 4e-30 Identities = 192/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||||| | |||||| || |||||||| || || || || || ||||| Sbjct 13502 GCGAAGAGACATCGCAAAGTTCTTCGTGACAACATCCAGGGGATTACGAAACCCGCTATT 13443 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | || |||||||| |||||||| || |||||| | || || | | |||||||| | Sbjct 13442 AGGCGGCTGGCTCGACGTGGTGGTGTTAAGCGTATTTCCGGTCTCATTTATGAAGAAACC 13383 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| ||||| | || || ||| |||||| | ||||||| | ||| || ||| Sbjct 13382 AGAGGTGTGTTGAAAGTGTTTCTGGAGAACGTTATTCGTGATGCTGTTACCTACACGGAG 13323 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||||| | ||||| || || | |||||| | || ||||||||||| | ||||| Sbjct 13322 CATGCTAAGAGGAAGACAGTTACAGCAATGGATGTGGTGTATGCATTGAAGAGACAAGGT 13263 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| || ||||| Sbjct 13262 CGTACACTGTACGGTTTCGGCGGTTAA 13236 >seq55 Length=1086311 Score = 138 bits (152), Expect = 2e-28 Identities = 183/249 (73%), Gaps = 4/249 (2%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || |||||||||||||| || ||||| || || | ||| ||||||| ||||| Sbjct 404403 TCTTCGTGACAACATCCAAGGAATTACTAAGCCTGCGATTAGGCGTTTGGCTCGGCGTGG 404462 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || ||||| | || || | | || || |||| ||||| || ||||| | || Sbjct 404463 TGGTGTAAAGCGAATATCGGGCCTCATTTACGAGGAGACTCGTGGAGTGTTGAAAGTTTT 404522 Query 16573 CCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTG 16631 | | | | ||||| | ||||||| || || || || ||||| || || | ||||||| Sbjct 404523 CTTGGAAAATGTTATTCGTGATGCTGTTACA-TACACGGAGCATGCCAAGAGGAAGACTG 404581 Query 16632 TCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATT-TATGGTTTT 16690 |||| |||||||| | || || || ||||| | || || || || ||| ||||| ||| Sbjct 404582 TCACTGCCATGGATGTAGTTTACGCTTTGAAGAGGCAGGGGCG-AACATTGTATGGGTTT 404640 Query 16691 GGAAGTTAA 16699 ||| ||||| Sbjct 404641 GGAGGTTAA 404649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79046251211766