Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq513 147 3e-30 seq95 118 1e-21 >seq513 Length=652068 Score = 147 bits (162), Expect = 3e-30 Identities = 172/230 (75%), Gaps = 7/230 (3%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 ||||||||| ||| ||||| ||| || ||||| |||||||| || || ||||| | Sbjct 206546 CCTCGTCTCGTGAAATAAGTTCATTGCTGAAGGTGAGACCGGGCATAAGTCCCCGCTTCT 206605 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||| || || | ||| || |||||| |||||||| ||||| ||||||||||| | Sbjct 206606 TTAACCAGAAGATAGCAGCAAAACTTCCAGAGAAGAAGATACCTTCCACTGCAGCAAACG 206665 Query 33446 CAATAAGTCTCTCTCCATAACCGGCGC--TGTCATG---TATCCACTTTTGAGCCCAATC 33500 ||| | |||||| || || || ||| | || || |||||||| | |||||||| Sbjct 206666 CAACCACTCTCTCACC--AAACGTCGCAGTTTCGTGCGCTATCCACTGAAGGGCCCAATC 206723 Query 33501 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 33550 ||||||||||| ||||| |||||||| || | ||| ||||| | |||| Sbjct 206724 TGCCTTCTTTTTCACACACGGCATCGTCTCAACGGCGTTAAATAAGTAGT 206773 Score = 122 bits (134), Expect = 1e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 33574 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33633 || ||||| ||||| | ||||||||||| ||||| | ||||| || || |||||||| Sbjct 207377 TAGGTATCAATCAACAAGCTATACATTTCTGAATGGACATTTTCCATCGCTATCTGAAAG 207436 Query 33634 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTT 33693 || ||||| ||||| || || || | |||||||| | |||| || ||||||| Sbjct 207437 CCATAGAAGCATCTTGCTTCTGTTACTTGTACTTCCTGGCTGAATCTCTCTACCAAATTC 207496 Query 33694 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 33753 ||||| || ||||| || ||||||||||| || | |||||| ||||||| | || Sbjct 207497 TCATTAACAATTCCATCTGAAGCTGCAAAAAATGCTAGTACATGGGAGATAAAATGTCTT 207556 Query 33754 TCGTCTGGTGTTAGTTTATTCCAAT 33778 || ||| ||| || | ||||||| Sbjct 207557 TCATCTTCTGTCAGCATGTTCCAAT 207581 >seq95 Length=16868 Score = 118 bits (130), Expect = 1e-21 Identities = 167/227 (74%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 63126 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA-TCCAGGACATTCATCCGG 63184 |||||||| || |||| ||| ||||| || | | || ||||||||| ||| ||| Sbjct 6552 GTATACAAGTCATCAAACTTGTCACCCCAG-CAGTCTGAAAGTCCAGGACAAGCATGCGG 6610 Query 63185 ACACATCAACGACCAC-TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63243 |||||||| |||| ||| ||| | ||||||||| |||||||| ||||||||||||| Sbjct 6611 ACACATCAGACTCCACATCT-CGTTGTTCTTCACTCGCTTCATAAATAGATCAGGAATCC 6669 Query 63244 AAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63302 | ||||| ||| || ||||| | | || | |||||| || || || || || || || Sbjct 6670 ACAGAGC-ATAGAAAAGATCCCGAGCTCGAATTTCCTCTTTCCCCGTGTTTTTCTTCAGG 6728 Query 63303 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63349 || || ||| | | | ||| | |||||| ||||||| || ||||| Sbjct 6729 TCAAGAAACTCAAACACATCTGCATGCCAGGGTTCCAGATAAATGGC 6775 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 63955 CACTAAATAGtttttttG-TTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGA 64013 ||||||| ||| |||||| ||||||| |||||||| || ||||| |||||||| || ||| Sbjct 10573 CACTAAA-AGTCTTTTTGGTTTCCTTATGTAGATTGGAGACGGCAATTCTGGCTGCAAGA 10631 Query 64014 ATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCC 64073 || || ||||||||||| | || || || || || | || || ||||| | ||| Sbjct 10632 ATCGCGTAATCCGGATGCTTGGTTGTCATGGTAGCAGCAGTCTCAGCGGCCAGGTTATCC 10691 Query 64074 AATTCTACCGTTGTTACTCC 64093 | ||| || |||||||| || Sbjct 10692 AGTTCCACTGTTGTTACACC 10711 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 62061 CTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATA 62120 |||||| |||| || |||||| ||| | ||| || |||| || || ||||| || Sbjct 2507 CTCCATGCGTAGAAGTGCATAGACGTCAATTTTCCGTAGTTCGGTTCGGCAATATGAATG 2566 Query 62121 TTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTC 62180 |||| || || || || || ||||| || || | ||| ||||||||||| || || || Sbjct 2567 TTCAGGGACTGGCTCTGGTCAATGAACGCACCTCGGTCAGCAGCCATTTTGATTATAGTT 2626 Query 62181 TTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 || || || |||||||| | ||||| || | ||||||||| || |||| Sbjct 2627 TTCTGCGGGATTTCCCACACCGTTTTGTAGAGGGCCTTAATATCATCCGGAA 2678 Score = 89.7 bits (98), Expect = 6e-13 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 62571 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62630 ||| | || || || ||||| || ||||| || ||||||||||| ||||| || || Sbjct 4429 CCTTCGTAAGTCTCATATGGGCCCCGTTTCTCGGCAAGTTCACAACTTGCCTCCAAAGCC 4488 Query 62631 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 62690 ||||| ||||| || || || |||| || |||||| | ||||| || || |||||| Sbjct 4489 CCGTAGTAAATAGTCTCAAATATCTGCTGATTTAGCTTCTGTGCCTCTTCACTGTCAAAT 4548 Query 62691 GGATAAT-TTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62740 || |||| | ||| || ||||| || || || ||||| | ||||| || Sbjct 4549 GG-TAATCTCAAGCAGATGAACGCATCTGCCAAACCTTGTATGCCAATGCC 4598 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425 || || || || || || | |||| || ||||| ||||||||||||||||| || | | Sbjct 7354 TTATTGCCACCTTGGTCCACATATCGTGCTGTGTTGTTATAAACTCTCAACATAGGCACA 7413 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA 63485 || || || || | |||||||| || | ||||| || | || || |||||| Sbjct 7414 ATGCCATTCGAAGTGCCATTGGTGCCAGCTATATACGAGCCTGTAGCGCGGATATTATGG 7473 Query 63486 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63545 || || || ||||| || || ||||| || | ||| ||| |||| | |||||| Sbjct 7474 ATGTGGAGTCCGATTCCACCAGCAGACTTAGAAATCAGTGCACATTGTTTCAGTGTGTCA 7533 Query 63546 TAGATACCCTCTATGCTATCATCGATCAT 63574 || || ||||| ||||| || || |||| Sbjct 7534 TAAATTCCCTCAATGCTGTCGTCCTTCAT 7562 Score = 82.4 bits (90), Expect = 1e-10 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||| ||||| |||| || | | |||||| ||||| | ||||||||||| | Sbjct 3753 ACCTGAAACTCTCCGGACAGCACACGTCTAGTGTAGATATTTGTTGTATACGGTTCAAAT 3812 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62446 ||||| || ||||| | |||||||| ||||| || |||||||| || || Sbjct 3813 GACTCGTTGTTTCCAAGGATTTGAGCCGTTGAAGCTGTCGGCATTGGCGC 3862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622700653071920