Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq95 118 3e-21 seq124 91.5 4e-13 >seq95 Length=16868 Score = 118 bits (130), Expect = 3e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 363837 AGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCT 363896 ||| || ||||| || ||||| || || ||||| ||| | |||||||||||||| || Sbjct 6785 AGGAGCATTTGCCATTTATCTGGAACCCTGGCATGCAGATGTGTTTGAGTTTCTTGACCT 6726 Query 363897 CCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGT 363956 |||||||||||| ||||||||| | || || || ||||| |||||||| || ||| | Sbjct 6725 GAAGAAAAACACGGGGAAAGAGGAAATTCGAGCTCGGGATCTTTTCTATGCTCTGTGGAT 6666 Query 363957 TTCTGACCATTTTATGAAGCGCGTGGAG 363984 | |||| | ||||||||||| ||| || Sbjct 6665 TCCTGATCTATTTATGAAGCGAGTGAAG 6638 Score = 84.2 bits (92), Expect = 6e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 364731 TCGCAACTCCCTCGTTACA-GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAA 364789 || |||||| || |||| ||||| ||||| || ||||| || || || ||||| |||| Sbjct 3881 TCACAACTCGCTT-TTACTCGCGCCAATGCCGACAGCTTCAACGGCTCAAATCCTTGGAA 3823 Query 364790 ACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAG 364849 ||||||||| || ||||||| ||||| ||| | || | | || || || ||||||| Sbjct 3822 ACAACGAGTCATTTGAACCGTATACAACAAATATCTACACTAGACGTGTGCTGTCCGGAG 3763 Query 364850 AATTTCCGGT 364859 | |||| ||| Sbjct 3762 AGTTTCAGGT 3753 >seq124 Length=507148 Score = 91.5 bits (100), Expect = 4e-13 Identities = 215/315 (68%), Gaps = 10/315 (3%) Strand=Plus/Plus Query 111488 AGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAAC 111547 ||| || || || || || || |||||||| ||||| || ||||| || | |||| Sbjct 494400 AGGAGACCTTGGTCCTGTGTATGGATTTCAGTGGCGTCATTTTGGGGCCAAATACATGGA 494459 Query 111548 CATGCACGACTCA-TATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAA 111606 |||| | ||| | ||| | || || ||||||||| ||| | || || | || | Sbjct 494460 CATGAAT-ACTGACTATTCTGGTCAAGGTGTTGATCAATTGCAGCAAGTAATCAA-CACA 494517 Query 111607 TTAAGAAC-AACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTG 111665 | | | | || ||| | ||||||||| || ||| || ||||||| | | || | Sbjct 494518 CTGAAATCTAAACCATATGATCGTCGCATGATCATGTGTTCATGGAATGCCATTGATATA 494577 Query 111666 GAAAAAATGGCACTTCCACCATGTCA-TCTTATGTGCCAGTTTTATGTACACGACGGGAT 111724 ||||||||| |||||||||||||| | ||| || || ||||| || ||| Sbjct 494578 CCAAAAATGGCTCTTCCACCATGTCACTGCCTTGT-TCAATTCTATGTTGCTGA--AGAT 494634 Query 111725 G--CTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAAT 111782 | || | ||||| |||||||||| || || || || || ||||| || || ||||| Sbjct 494635 GAACTGTACTGCCAGCTGTATCAGCGTTCAGCAGACATGGGCCTTGGAGTACCATTTAAC 494694 Query 111783 ATTGCAAGTTACGCA 111797 ||||| ||||| ||| Sbjct 494695 ATTGCTAGTTATGCA 494709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302824869359684