Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq666 161 7e-35 seq4410 140 2e-28 seq3792 136 3e-27 seq2122 136 3e-27 seq419 122 6e-23 seq583 98.7 7e-16 seq950 91.5 1e-13 seq517 84.2 1e-11 >seq666 Length=408878 Score = 161 bits (178), Expect = 7e-35 Identities = 211/288 (73%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 |||| || ||||| || || || ||||| || |||||||| ||||||||| ||| |||| Sbjct 69463 ACCCAACAAAATACTTTGGCTGTGAACTGGGAGCTCAGACCCAGTTTGATTTCAAGAACG 69522 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | ||||| || || ||||| ||||| | | | |||||||| ||||| ||||| || | Sbjct 69523 ACCGCTTTATTGTGAACGGTTCGCACGATGCGACAAAGCTGCAAGACTTGCTTGATGGTT 69582 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGT 6498 | |||||||||||||||||||| | || || || || || || ||| ||| | ||| Sbjct 69583 TCATTCGCAAGTTTGTGCTGTGCCCCGAGTGTGACAATCCAGAAACCACGCTGACTGT-- 69640 Query 6499 CTACCAAGAGAAA---CACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGG-CAAG 6554 | | ||| ||| |||||| || | ||||| || || || || ||||| | | Sbjct 69641 -AAGCCAGAAAAAGTCAACCATCAACCAAGCATGCAAGGCTTGTGGGTATCATGGACCAC 69699 Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602 || ||| | | || ||||||||||| |||||| | ||||| |||||| Sbjct 69700 TTGAATTCAAC-CATAAACTCAACACTTTCATAATCAAGAACCCTCCA 69746 Score = 109 bits (120), Expect = 4e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 ||||||| |||| ||||| || | |||| || ||||||||||| ||||| ||||| Sbjct 68906 ATGGGGAGTGTGAATGTAAACCGCAGTGTGAGCGATGCGTTCTACCGGTACAAGATGCCT 68965 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 ||| || | |||||||| ||||| ||||| || || || || || ||||| ||||| ||| Sbjct 68966 CGCCTCCGTGCCAAGGTTGAGGGCAAGGGTAATGGCATCAAGACTGTCATCGTCAATATG 69025 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCAC 6316 || ||||| || || | ||| | |||||||| Sbjct 69026 ATAGATGTCGCCAAAGCTATAGGAAGACCTGCCAC 69060 >seq4410 Length=11626 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 9072 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 9131 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 9132 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 9166 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||| Sbjct 11283 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTTTCGT 11342 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||| ||| Sbjct 11343 ACTCATATTTAGCTTTA 11359 >seq3792 Length=9805 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 8562 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 8621 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 8622 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 8656 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||| Sbjct 1137 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCACGC 1196 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||||| Sbjct 1197 TGCAATATTTAGCCTTA 1213 >seq2122 Length=5419 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||||||||||||||||||| || |||||||| Sbjct 5028 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 4969 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 4968 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 4934 >seq419 Length=560957 Score = 122 bits (134), Expect = 6e-23 Identities = 73/77 (95%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 554741 CTCTCTCTTCAAAGTTCTTTCCAACTTTCCCTCACGGTACTTGTTCGCTATCGATCTCGT 554800 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 554801 GGTCATATTTAGCCTTA 554817 >seq583 Length=527131 Score = 98.7 bits (108), Expect = 7e-16 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 38128 CCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATA 38187 |||| |||||||| ||||| ||||| || | || |||||||| || || ||||| | Sbjct 233048 CCTTCTGAATATTATAATCCGACAACGTGCGACCATCTTCTAATTGCTTCCCAGCAAAGA 232989 Query 38188 TTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCT 38247 | | || ||||| || | |||| |||||||| || ||| || ||| ||||| | Sbjct 232988 TCAATCGCTGTTGGTCCGGTGGGATACCTTCTTTATCTTGAATCTTAGCCTTGACATTTT 232929 Query 38248 GGACAGTATCTCCACTT-TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | ||||| | || |||||||| | || |||||||||||||| | |||||| ||| Sbjct 232928 CTATGGTATC-CGACGCCTCAACTTCGAGGGTTATAGTTTTACCCGTTAGGGTTTTTACG 232870 Query 38307 AATATCTGCAT 38317 || || ||||| Sbjct 232869 AAAATTTGCAT 232859 >seq950 Length=836093 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 38128 CCTTT-TGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| || || ||||| || |||||| || | || || | || || || ||||| Sbjct 301960 CCTTTCTGGATGTTGTAGTCCGACAAAGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 302019 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || || || || || || | || | |||||| ||||| || || ||||||||| Sbjct 302020 ATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTGGCTTTCACATTC 302079 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | | |||||| || ||||| || ||||| ||||| || ||||||||||| ||| Sbjct 302080 TCAATCGTATCTGATGCCTCCACTTCCAAAGTAATCGTTTTGCCTGTCAAGGTTTTGACG 302139 Query 38307 AATATCTGCATG 38318 |||||||||||| Sbjct 302140 AATATCTGCATG 302151 >seq517 Length=773157 Score = 84.2 bits (92), Expect = 1e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 19963 CTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGCCTT 20022 ||| ||||||||| ||||||||| ||||||||||||||||||| ||| ||||||| |||| Sbjct 35027 CTTCTCAACTTTCTCTCACGGTATTTGTTCGCTATCGGTCTCGTGGTCATATTTATCCTT 35086 Query 20023 A 20023 | Sbjct 35087 A 35087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334817950365122