Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq950 122 8e-23 seq583 116 3e-21 seq1183 111 1e-19 seq394 86.0 5e-12 >seq950 Length=836093 Score = 122 bits (134), Expect = 8e-23 Identities = 154/208 (74%), Gaps = 9/208 (4%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||| |||| || || | |||||| | ||||| ||| | || Sbjct 300873 AATGCAGATCTTTGTTAAGACTCTGACAGGCAAGACAATCACATTGGAAGTAGAGGCTTC 300814 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| || || ||| | || |||| || | ||| ||||||||||| ||||||||||| Sbjct 300813 TGATACGATTGAG--AATGTTAAAGCCAAGATTCAG-GACAAAGAAGGAATTCCACCTGA 300757 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||||| | || ||||| ||||| || | || |||| ||||| || ||||| Sbjct 300756 TCAACAGCGACTGATCTTTGCTGGCAAGCAGCTGGAGGATGGACGCACACTG---GATTA 300700 Query 25175 CAATATTCAAAAAGAATCCACGCTACAT 25202 ||| | || |||||||| || || ||| Sbjct 300699 CAACAACCAGAAAGAATCAACACTCCAT 300672 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || || ||||| || ||| |||| || | ||||| ||| | ||| Sbjct 297705 ATGCAGATATTTGTCAAAACCTTGACAGGAAAAACCATTACTCTGGAAGTAGAGGCTTCT 297646 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| |||| || ||| ||||||||||| |||||||| ||||| Sbjct 297645 GATACAATTGAGAACGTGAAAGCCAAGATCCAGGACAAAGAAGGCATTCCACCAGACCAG 297586 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| ||||| || | || |||| || || | ||||| ||| Sbjct 297585 CAGCGACTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTCTCAGATTATAAT 297526 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || || || || | ||||| Sbjct 297525 ATCCAGAAAGAGTCTACACTCCACCTTGTGCT 297494 >seq583 Length=527131 Score = 116 bits (128), Expect = 3e-21 Identities = 143/193 (74%), Gaps = 8/193 (4%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || ||||| || | || |||||| | || || ||||||| ||| |||| Sbjct 232858 AATGCAAATTTTCGTAAAAACCCTAACGGGTAAAACTATAACCCTCGAAGTTGAGGCGTC 232917 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || || || || |||| | || || | ||| || |||||||| || ||||| | Sbjct 232918 GGATACCATAGAAAATGTCA---AGGCTAAGATTCAA-GATAAAGAAGGTATCCCACCGG 232973 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 |||||||||| | || ||||| || || ||||||||||||| |||||| || |||| Sbjct 232974 ACCAACAGCGATTGATCTTTGCTGGGAAGCAATTAGAAGATGGTCGCACGTTGTCGGATT 233033 Query 25174 ACAATATTCAAAA 25186 | |||||||| || Sbjct 233034 ATAATATTCAGAA 233046 >seq1183 Length=31732 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| | || || ||| | || Sbjct 15879 ATGCAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTAGAGCCAGCT 15820 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| || ||| |||| | ||||| ||||| || || ||||| || Sbjct 15819 GATACCATTGAGAATCTAAAGAAAAAGCTGCAGGACAAGGAAGGTATCCCCCCTGAGCAG 15760 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||| ||||| ||||| ||||| ||||||| ||||| | |||||||| Sbjct 15759 CAGCGACTTATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACCTTATCAGATTACAAC 15700 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 || || ||||||||||| || || || || Sbjct 15699 ATCCAGAAAGAATCCACCCTCCACTTGGT 15671 >seq394 Length=806705 Score = 86.0 bits (94), Expect = 5e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| || || ||||| || ||||| | |||||||| || |||||| | ||||||| ||| Sbjct 96858 AGGTATCCCCCCTGATCAGCAGCGCCTGATTTTTGCTGGAAAACAACTTGAAGATGGTCG 96917 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAG 25219 || | ||||| ||||||||||| ||||| || || || |||| ||| | || || Sbjct 96918 AACATTATCTGATTATAATATTCAAAAGGAATCTACACTTCACCTAGTTCTACGCCTGAG 96977 Query 25220 AGGAGGA 25226 |||||| Sbjct 96978 GGGAGGA 96984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433160787120530