Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq513 149 7e-31 seq307 118 1e-21 seq864 116 4e-21 seq949 105 7e-18 >seq513 Length=652068 Score = 149 bits (164), Expect = 7e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 ||| | |||||| ||||| || |||| ||||||||| ||||||||||| ||||| || Sbjct 207367 ATCCCTTATGTAGGTATCAATCAACAAGCTATACATTTCTGAATGGACATTTTCCATCGC 207426 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 || || || || ||||| ||||| ||||| || | || ||||| || |||||||| Sbjct 207427 TATCTGAAAGCCATAGAAGCATCTTGCTTCTGTTACTTGTACTTCCTGGCTGAATCTCTC 207486 Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 ||| | ||| ||||| || || ||||| || ||||||||||| || | || ||| || Sbjct 207487 TACCAAATTCTCATTAACAATTCCATCTGAAGCTGCAAAAAATGCTAGTACATGGGAGAT 207546 Query 93535 AAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT 93569 ||||||| | ||||| ||| | ||| | | ||||| Sbjct 207547 AAAATGTCTTTCATCTTCTGTCAGCATGTTCCAAT 207581 Score = 109 bits (120), Expect = 6e-19 Identities = 95/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 || || | ||| |||||||| ||||||||||||| |||||||| || |||||||| | | Sbjct 207894 TTGGATAAATCCACTTCTTCCGCAGTCCAAAACGAAGCTTCTGCCTTCTTGTACATTTGC 207953 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTA 93698 |||||||| |||||||| || || || || ||||| || | ||||| ||| |||||| Sbjct 207954 CATATGTCGTGATATTGGATGGGGAAGATTACAAATCGTCTTGGGTTCTCTCTTAGTA 208011 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 ||||||||||| || | ||||||||||| || | ||| || | ||||| || ||||| Sbjct 206548 TCGTCTCGTGAAATAAGTTCATTGCTGAAGGTGAGACCGGGCATAAGTCCCCGCTTCTTT 206607 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 | ||| || || | ||||||||| ||||| || || ||||||||||| || ||||| || Sbjct 206608 AACCAGAAGATAGCAGCAAAACTTCCAGAGAAGAAGATACCTTCCACTGCAGCAAACGCA 206667 Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTACTGC-TGATCCATTTTAAAGCCCAATCGGC 93294 || | | || |||| | || | || ||| ||||| | | |||||||| || Sbjct 206668 ACCACTCTCTCACCAAACGTCGCAG-TTTCGTGCGCTATCCACTGAAGGGCCCAATCTGC 206726 Query 93295 TTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATC 93342 || || || | ||| || | || || | |||||||||| ||| || Sbjct 206727 CTTCTTTTTCACACACGGCATCGTCTCAACGGCGTTAAATAAGTAGTC 206774 >seq307 Length=708274 Score = 118 bits (130), Expect = 1e-21 Identities = 88/101 (87%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGG 126319 || |||||| ||||||||| |||||||||||||||| ||||| |||||||||| ||| Sbjct 590954 TATAGTCAGATTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCGAAAGGG 591013 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACA-AATTATTATTGG 126359 ||||||||||||||||||||| |||||| |||| || |||| Sbjct 591014 AGCGTGGGTTCGAACCCCACATCTGACAGAATTTTTTTTGG 591054 >seq864 Length=662056 Score = 116 bits (128), Expect = 4e-21 Identities = 84/95 (88%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--GGGAGCG 126323 ||||||||||||||| ||||||||||| |||| ||||| |||| ||||| | ||||||| Sbjct 219858 GTCAGGTTGGCCGAGCGGTCTAAGGCGTCAGACTTAAGTTCTGATTCCCGCGAGGGAGCG 219917 Query 126324 TGGGTTCGAACCCCACACCTGACAA-ATTATTATT 126357 ||||||||||||||||||||||||| ||| || || Sbjct 219918 TGGGTTCGAACCCCACACCTGACAATATTTTTTTT 219952 >seq949 Length=786784 Score = 105 bits (116), Expect = 7e-18 Identities = 75/85 (88%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| ||||||||||| |||| | |||||||| ||||| ||||||| Sbjct 560405 GTCAGGTTGGCCGAGCGGTCTAAGGCGTCAGACTCAAGATCTGATTCCCGTAAGGGAGCG 560346 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 |||||| |||||||||||||||||| Sbjct 560345 TGGGTTTGAACCCCACACCTGACAA 560321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556640408416880