Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq70 165 7e-36 seq1183 132 4e-26 seq623 127 2e-24 seq352 120 3e-22 seq950 116 3e-21 seq583 105 6e-18 seq1068 93.3 4e-14 seq95 82.4 6e-11 >seq70 Length=429657 Score = 165 bits (182), Expect = 7e-36 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||| | ||||| || ||| | || || ||||| | ||||||||||| ||| | | Sbjct 142349 GATGCAAGTCTTTGTGAAGACTCTCACTGGAAAAACCATTACTCTTGAAGTTGAACCATC 142408 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||||| || | | |||| ||||||||| |||||||| || ||||| || |||| Sbjct 142409 TGACACCGTTGAAAACTTGAAACGAAAAATTCAGGACAAGGAAGGAATTCCTCCTCATCA 142468 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||||||| | || ||||| ||||| || || |||||| ||||||| | || |||||||| Sbjct 142469 ACAACGTTTAATTTTTGCTGGCAAGCAATTGGAGGATGGCCGCACCTTATCAGATTACAA 142528 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTT 22448 ||| || |||||||| ||| | || || ||| | || | || || ||||| Sbjct 142529 CATCCATAAAGAATCAACCCTGCACTTGGTTCTTCGCCTCCGAGGTGGTTT 142579 >seq1183 Length=31732 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || || ||||||| || || || | | Sbjct 15879 ATGCAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTAGAGCCAGCT 15820 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || |||| | || |||||||| ||||| || || || || Sbjct 15819 GATACCATTGAGAATCTAAAGAAAAAGCTGCAGGACAAGGAAGGTATCCCCCCTGAGCAG 15760 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| ||||| ||||| || || || ||| ||||||| | || ||||||||| Sbjct 15759 CAGCGACTTATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACCTTATCAGATTACAAC 15700 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || |||||||||||| | || || || ||||| |||| || ||| Sbjct 15699 ATCCAGAAAGAATCCACCCTCCACTTGGTATTGCGTCTGCGTGGTGGT 15652 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | || || || || ||||||| || || || | | Sbjct 15651 ATGCAGATTTTTGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTAGAGCCAGCT 15592 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || |||| | || |||||||| ||||| || || || || Sbjct 15591 GATACCATTGAGAATCTAAAGAAAAAGCTGCAGGACAAGGAAGGTATCCCCCCTGAGCAG 15532 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| ||||| ||||| || || || ||| ||||||| | || ||||||||| Sbjct 15531 CAGCGACTTATGTTTGCTGGCAAGCAATTGGAAGATGGCCGCACCTTATCAGATTACAAC 15472 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTT 22448 || || |||| ||| ||| | || || ||| | || | || || ||||| Sbjct 15471 ATCCAGAAAGGATCAACCCTGCACTTGGTTCTTCGCCTCCGAGGTGGTTT 15422 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||| | || || ||||| ||||||||||| ||| | | Sbjct 17427 ATGCAAATCTTTGTGAAAACTCTCACTGGAAAAACCTGTACTCTTGAAGTTGAACCTTCA 17368 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | |||||| | | | || ||||| || ||||| | |||||| Sbjct 17367 GACACCATTGAAAACGTGAAACAACATCTAGAGGAAAAGGAAGGAATTCCCTCTGATCAA 17308 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | | ||||| || || ||||| | ||| | || || |||| || ||||| Sbjct 17307 CAACGATTAAATTTTGCAGGAAAGCAGTTGAAAGATGATCGTACACTCTCTGACTACAAT 17248 Query 22399 ATTCAAAAAG 22408 || || |||| Sbjct 17247 ATACAGAAAG 17238 >seq623 Length=111817 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | || || || || ||||||| || || || | | Sbjct 107874 ATGCAGATTTTTGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTAGAGCCAGCT 107815 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | ||| ||| || || |||||||| ||||| || || | || Sbjct 107814 GATACCATTGAGAACGTGAAAGCAAAGATCCAGGACAAGGAAGGTATCCCTCCTGGCCAG 107755 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| ||||| ||||| || || |||||| ||| ||| | || ||||||||| Sbjct 107754 CAGCGACTTATCTTTGCTGGCAAGCAATTGGAGGATGGCCGTACCTTATCAGATTACAAC 107695 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTT 22448 || || |||||||| ||| | ||||| ||| | || | || || ||||| Sbjct 107694 ATCCAGAAAGAATCAACCCTGCATTTGGTTCTTCGCCTCCGAGGTGGTTT 107645 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| ||||| || ||| | || || ||||| | | ||||||||||||||| | Sbjct 110520 GATGCAAATCTTTGTGAAGACTCTCACTGGAAAAACCATTATTCTTGAAGTGGAAACGTC 110461 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | | ||| ||||||||| |||||||| || ||||| || ||||| Sbjct 110460 TGACACCATTGAAAACGTTAAAGCAAAAATTCAGGACAAGGAAGGAATTCCTCCTGATCA 110401 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||||||| | || ||||| || || ||||| || ||| || || | || || ||||| Sbjct 110400 ACAACGTTTAATTTTTGCAGGAAAGCAGTTGGAAGATGGTCGTACACTTTCTGACTACAA 110341 Query 22398 CATTCAAAAAG 22408 || || |||| Sbjct 110340 TATACAGAAAG 110330 >seq352 Length=269356 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| ||||| || ||| | || || ||||| || ||||||||||||||||| Sbjct 29495 GATGCAAATCTTTGTGAAGACTCTCACTGGAAAAACCGTTACTCTTGAAGTGGAAACGTT 29436 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || | |||| ||| | | |||||||| || ||||| || ||||| Sbjct 29435 TGACACCATTGAAGACGTGAAACGCAAACTCAACGACAAGGAAGGAATTCCCCCTGATCA 29376 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||||||| | || ||||| || || ||||| || ||| || || | || || ||||| Sbjct 29375 ACAACGTTTAATTTTTGCAGGAAAGCAGTTGGAAGATGGTCGTACAATTTCTGACTACAA 29316 Query 22398 CATTCAAAAAG 22408 || || |||| Sbjct 29315 TATACAGAAAG 29305 >seq950 Length=836093 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||| | || || || || | ||| | ||||||||| | | Sbjct 302378 ATGCAGATTTTCGTGAAAACTCTGACTGGCAAGACCATTACTTTAGAAGTGGAAGCATCT 302319 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| || || ||||||||||| || |||||||| || || Sbjct 302318 GATACGATTGAGAATGTGAAAGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAG 302259 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||| | |||||| ||| ||| |||| ||||| || Sbjct 302258 CAGCGACTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTCTCTGATTATAAT 302199 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || ||||| || Sbjct 302198 ATCCAGAAGGAATCTAC 302182 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| || || || |||||| | ||| | |||||||| | | Sbjct 302150 ATGCAGATATTCGTCAAAACCTTGACAGGCAAAACGATTACTTTGGAAGTGGAGGCATCA 302091 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| || || ||||||||||| || |||||||| || || Sbjct 302090 GATACGATTGAGAATGTGAAAGCCAAGATCCAAGACAAGGAAGGCATTCCACCAGACCAG 302031 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||| | || ||| ||| || | || || |||||| Sbjct 302030 CAGCGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACTTTGTCGGACTACAAC 301971 Query 22399 ATTCAAAAAG 22408 || || |||| Sbjct 301970 ATCCAGAAAG 301961 >seq583 Length=527131 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| |||| |||||||| | || || ||||| || | | Sbjct 232859 ATGCAAATTTTCGTAAAAACCCTAACGGGTAAAACTATAACCCTCGAAGTTGAGGCGTCG 232918 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| || |||||||| || || ||||| ||||| || ||| Sbjct 232919 GATACCATAGAAAATGTCAAGGCTAAGATTCAAGATAAAGAAGGTATCCCACCGGACCAA 232978 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||| || || || ||||| ||| ||||| | || ||||| || Sbjct 232979 CAGCGATTGATCTTTGCTGGGAAGCAATTAGAAGATGGTCGCACGTTGTCGGATTATAAT 233038 Query 22399 ATTCAAAA 22406 ||||| || Sbjct 233039 ATTCAGAA 233046 >seq1068 Length=143541 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279 |||| |||||||| || || | || || || || ||||||| || || || | Sbjct 133998 TGCAGATTTTTGTGAAGACCCTGACAGGGAAGACCATCACTCTGGAGGTAGAGCAAGCTA 133939 Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339 ||||| | || || | || ||| | || || ||||| ||||| || || || || Sbjct 133938 ATACCATTGAGAATGTAAAGGCAAAGCTCCAGGAAAAGGAAGGTATCCCCCCTGACCAGT 133879 Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACA 22399 | || ||| | ||||| ||||| || || |||||| |||||| | || |||||||||| Sbjct 133878 AGCGACTTGTCTTTGCTGGCAAGCAATTGGAGGATGGCCGCACTTTATCAGATTACAACA 133819 Query 22400 TTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTT 22448 | || ||| |||| ||| | |||| ||| | || | || || ||||| Sbjct 133818 TCCAGAAATAATCAACCCTGCATTCGGTTCTTCGTCTCCGAGGTGGTTT 133770 >seq95 Length=16868 Score = 82.4 bits (90), Expect = 6e-11 Identities = 129/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 129980 CACGCGGACACATCAAACTCCACAT-TCCATCCGCTTCGACTCGTTTCATAAACAAATCG 130038 || |||||||||||| ||||||||| || | |||| ||||| |||||||| | ||| Sbjct 6604 CATGCGGACACATCAGACTCCACATCTCGTTGTTCTTC-ACTCGCTTCATAAATAGATCA 6662 Query 130039 GGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTACGT 130098 || | |||||| || || || | ||| || ||| | ||||| ||| |||| Sbjct 6663 GGAATCCACAGAGCATAGAAAAGATCCCGAGCTCGAATTTCCTCTTTCCCCGTGTTTTTC 6722 Query 130099 TTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCG 130158 ||||| ||||| || || | | || || ||||| ||||| | |||||| || | ||| Sbjct 6723 TTCAGGTCAAGAAACTCAAACACATCTGCATGCCAGGGTTCCAGATAAATGGCAAATGCT 6782 Query 130159 CC 130160 || Sbjct 6783 CC 6784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419566035097030