Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1183 109 5e-19 seq623 105 6e-18 seq70 98.7 8e-16 seq950 96.9 3e-15 seq583 87.8 2e-12 >seq1183 Length=31732 Score = 109 bits (120), Expect = 5e-19 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || || || | || |||||||| || |||||||||| Sbjct 15650 ATACCACCACGCAGACGCAATACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAAT-- 15707 Query 114213 CTCATA--GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 || ||| || || |||||| | ||| || ||||| |||| || ||||| || || | Sbjct 15708 CTGATAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGCTCAG 15767 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATT 114330 | || || ||||| ||||| | ||||| ||||| | |||| ||| || | | | Sbjct 15768 GGGGGATACCTTCCTTGTCCTGCAGCTTTTTCTTTAGATTCTCAATGGTATCAGCTGGCT 15827 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 | || |||| || | || || || ||||| || || || |||||||||||| Sbjct 15828 CTACCTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATG 15880 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || || | | ||| || || | || ||| |||| || |||||||||| || Sbjct 15424 ACCACCTCGGAGGCGAAGAACCAAGTGCAGGGTTGATCCTTTCTGGATGTTGTAAT--CT 15481 Query 114215 CATA--GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 ||| || || |||||| | ||| || ||||| | || || ||||| || || || Sbjct 15482 GATAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAACATAAGTCGCTGCTGCTCAGGG 15541 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| | ||||| ||||| | |||| ||| || | | || Sbjct 15542 GGGATACCTTCCTTGTCCTGCAGCTTTTTCTTTAGATTCTCAATGGTATCAGCTGGCTCT 15601 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || ||||| || || |||||||||||||| Sbjct 15602 ACCTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAAATCTGCAT 15651 >seq623 Length=111817 Score = 105 bits (116), Expect = 6e-18 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || || | | ||| ||||| | || |||||||| || |||||||||| || Sbjct 107647 ACCACCTCGGAGGCGAAGAACCAAATGCAGGGTTGATTCTTTCTGGATGTTGTAAT--CT 107704 Query 114215 CATA--GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 ||| ||||| ||| || | ||| || ||||| |||| || ||||| ||| | ||| Sbjct 107705 GATAAGGTACGGCCATCCTCCAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGGCCAGGA 107764 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| |||||| ||| | | |||| ||| || | | || Sbjct 107765 GGGATACCTTCCTTGTCCTGGATCTTTGCTTTCACGTTCTCAATGGTATCAGCTGGCTCT 107824 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || | || || || ||||| || || ||||||||||||||| Sbjct 107825 ACCTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAAATCTGCATG 107875 >seq70 Length=429657 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || || | | ||| || || | || |||||||| || ||||||||||| | Sbjct 142577 ACCACCTCGGAGGCGAAGAACCAAGTGCAGGGTTGATTCTTTATGGATGTTGTAATC--T 142520 Query 114215 CATA--GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 ||| || || ||| || | ||| || ||||| | || | ||| ||||| | ||| Sbjct 142519 GATAAGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAAATTAAACGTTGTTGATGAGGA 142460 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||| ||| |||| | | |||||||||||| | | ||| Sbjct 142459 GGAATTCCTTCCTTGTCCTGAATTTTTCGTTTCAAGTTTTCAACGGTGTCAGATGGTTCA 142400 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || ||||| || ||||| | ||||| Sbjct 142399 ACTTCAAGAGTAATGGTTTTTCCAGTGAGAGTCTTCACAAAGACTTGCAT 142350 >seq950 Length=836093 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/197 (71%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||||| || || || ||| || || || || ||| Sbjct 300679 GTTGATTCTTTCTGGTTGTTGTAATC---CAGTGTGCGTCCATCCTCCAGCTGCTTGCCA 300735 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || |||||||| || || ||||| ||||||||||| |||||| ||| Sbjct 300736 GCAAAGATCAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTA 300795 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| || || | | || || |||| || | || ||||| |||||||| Sbjct 300796 ACATTCTCAATCGTATCAGAAGCCTCTACTTCCAATGTGATTGTCTTGCCTGTCAGAGTC 300855 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 300856 TTAACAAAGATCTGCAT 300872 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 114193 CTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGA 114252 |||| || |||||||| || || ||| || |||||| || || || ||||| ||| Sbjct 301961 CTTTCTGGATGTTGTAGTCCGACAAAGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGA 302020 Query 114253 TGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTT 114312 | || ||||| ||||| || ||||||||||| ||||| ||||| ||| | | | Sbjct 302021 TCAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTGGCTTTCACATTCT 302080 Query 114313 CAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372 ||| || || | | || || |||| || | ||||||||| |||| ||||| || | Sbjct 302081 CAATCGTATCTGATGCCTCCACTTCCAAAGTAATCGTTTTGCCTGTCAAGGTTTTGACGA 302140 Query 114373 AAATCTGCATG 114383 | ||||||||| Sbjct 302141 ATATCTGCATG 302151 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| ||||| || || || ||||| | || || ||| || || || || ||| Sbjct 297509 GTAGACTCTTTCTGGATATTATAATCTGAGAGGGTTCGGCCATCCTCCAGCTGCTTGCCA 297568 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || ||||| ||||| || ||||||||||||||||| ||||| ||| Sbjct 297569 GCAAAGATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTC 297628 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| || || | | || || |||| || | ||||| || |||| ||| Sbjct 297629 ACGTTCTCAATTGTATCAGAAGCCTCTACTTCCAGAGTAATGGTTTTTCCTGTCAAGGTT 297688 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 297689 TTGACAAATATCTGCATG 297706 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || || | || | ||| | |||||||| || || || || ||||| Sbjct 302149 ATGCCACCTCGAAGCCTGAGGACGAGATGAAGTGTAGATTCCTTCTGGATATTATAATCA 302208 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| || || || || ||||| |||| || ||||| ||||| || Sbjct 302209 GAGAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGT 302268 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||||| ||| | | |||| || || | | ||| Sbjct 302269 GGAATTCCTTCCTTGTCTTGGATCTTGGCTTTCACATTCTCAATCGTATCAGATGCTTCC 302328 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | || ||||| ||||||||||| || |||||||||||| Sbjct 302329 ACTTCTAAAGTAATGGTCTTGCCAGTCAGAGTTTTCACGAAAATCTGCATG 302379 >seq583 Length=527131 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/197 (70%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 114195 TTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATG 114254 || ||||| || ||||| || || ||| |||||| | ||| || ||||| |||| Sbjct 233046 TTCTGAATATTATAATCCGACAACGTGCGACCATCTTCTAATTGCTTCCCAGCAAAGATC 232987 Query 114255 AGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCA 114314 | |||||||||||||| || || |||||||| || |||||| || | | ||| Sbjct 232986 AATCGCTGTTGGTCCGGTGGGATACCTTCTTTATCTTGAATCTTAGCCTTGACATTTTCT 232927 Query 114315 ACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 114374 | ||| || | | || || || | ||| | ||||| || || || |||||||| ||| Sbjct 232926 ATGGTATCCGACGCCTCAACTTCGAGGGTTATAGTTTTACCCGTTAGGGTTTTTACGAAA 232867 Query 114375 ATCTGCAT---GGCTTA 114388 || ||||| |||||| Sbjct 232866 ATTTGCATTCCGGCTTA 232850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419972278275144