Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq950 136 9e-27 seq623 129 1e-24 seq583 120 7e-22 seq571 89.7 1e-12 >seq950 Length=836093 Score = 136 bits (150), Expect = 9e-27 Identities = 173/237 (73%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || || || |||||||||| || ||| || ||||||||||| | Sbjct 302148 CATG-CCACCTCGAAGCCTGAGGACGAGATGAAGTGTAGATTCCTTCTGGATATTATAAT 302206 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| || || || || || | || || || || |||||||| ||||| || Sbjct 302207 CAGAGAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGGTCTG 302266 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||| |||||||| || || ||||| || |||||||| || || || | ||| | || Sbjct 302267 GTGGAATTCCTTCCTTGTCTTGGATCTTGGCTTTCACATTCTCAATCGTATCAGATGCTT 302326 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGT 288478 | ||||| | || || ||||| || |||||||| || ||||| |||||||| |||| Sbjct 302327 CCACTTCTAAAGTAATGGTCTTGCCAGTCAGAGTTTTCACGAAAATCTGCATGATGT 302383 Score = 125 bits (138), Expect = 2e-23 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 288235 ATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATA 288294 ||||| | || || || ||||| | ||| || || || | || ||||| |||||| Sbjct 297467 ATTCAGAGCTGCCCTCCCCGGAGACGAAGCACAAGGTGGAGTGTAGACTCTTTCTGGATA 297526 Query 288295 TTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGT 288354 ||||| || | ||| || || || || || | || || || || |||||||| ||||| Sbjct 297527 TTATAATCTGAGAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGTCGCTGC 297586 Query 288355 TGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG 288414 || ||| || |||||||| |||||||| || ||||||||||| || || | ||| Sbjct 297587 TGGTCTGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATTGTATCA 297646 Query 288415 CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | |||||||| || || || || || || |||| || ||||| ||||||||||| Sbjct 297647 GAAGCCTCTACTTCCAGAGTAATGGTTTTTCCTGTCAAGGTTTTGACAAATATCTGCAT 297705 Score = 122 bits (134), Expect = 2e-22 Identities = 143/193 (74%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||| | || || || || |||||||| || || | || || || || || Sbjct 300684 TTCTTTCTGGTTGTTGTAATCC---AGTGTGCGTCCATCCTCCAGCTGCTTGCCAGCAAA 300740 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| ||||||||| | ||| ||||||||||| ||||| || || ||||| || || Sbjct 300741 GATCAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTAACATT 300800 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| | |||||||| | ||||| ||||| || ||||||||||| || Sbjct 300801 CTCAATCGTATCAGAAGCCTCTACTTCCAATGTGATTGTCTTGCCTGTCAGAGTCTTAAC 300860 Query 288462 GAATATCTGCATT 288474 || ||||||||| Sbjct 300861 AAAGATCTGCATT 300873 Score = 107 bits (118), Expect = 5e-18 Identities = 124/166 (75%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || || || ||||| |||| || ||| || ||||||||||| | Sbjct 297703 CATG-CCACCTCGAAGCCTGAGGACGAGGTGAAGTGTAGATTCCTTCTGGATATTATAAT 297761 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| || || || || || | ||||| || || |||||||| ||||| || Sbjct 297762 CTGAGAGGGTTCGGCCATCCTCCAGCTGTTTGCCAGCAAAGATCAGTCGCTGCTGGTCTG 297821 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTAT 288407 ||| ||||||||||| |||||||| || ||||||||||| || || Sbjct 297822 GTGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAAT 297867 Score = 95.1 bits (104), Expect = 3e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| ||||| || ||||| | | || || || ||||| | || || || || |||| Sbjct 301961 CTTTCTGGATGTTGTAGTCCGACAAAGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGA 302020 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 |||| ||||| || ||| || ||||| || || ||||| || |||||||| || | Sbjct 302021 TCAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTGGCTTTCACATTCT 302080 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | || | ||| | || ||||| | || ||||| || || |||| || ||||||| Sbjct 302081 CAATCGTATCTGATGCCTCCACTTCCAAAGTAATCGTTTTGCCTGTCAAGGTTTTGACGA 302140 Query 288464 ATATCTGCAT 288473 |||||||||| Sbjct 302141 ATATCTGCAT 302150 >seq623 Length=111817 Score = 129 bits (142), Expect = 1e-24 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || | ||| | || |||||| ||||| || || || | Sbjct 107648 CCACCTCGGAGGCGAAGAACCAAATGCAGGGTTGATTCTTTCTGGATGTTGTAATCTGAT 107707 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || || || ||||| || || || ||||| || ||||| || | ||| Sbjct 107708 AAGGTACGGCCATCCTCCAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGGCCAGGAGGG 107767 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC-GCTCGATTCTAC 288425 || ||||| || |||||||| || ||||||||||| || || | ||| ||| | ||||| Sbjct 107768 ATACCTTCCTTGTCCTGGATCTTTGCTTTCACGTTCTCAATGGTATCAGCT-GGCTCTAC 107826 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| |||||||| ||||| ||||| || || |||||||| Sbjct 107827 CTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAAATCTGCAT 107874 >seq583 Length=527131 Score = 120 bits (132), Expect = 7e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || || |||||||| || | | |||||| || ||||||||||| || || || |||||| Sbjct 233046 TTCTGAATATTATAATCCGACAACGTGCGACCATCTTCTAATTGCTTCCCAGCAAAGATC 232987 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | |||||||| |||||| ||||||||||| || || || || || || |||||| Sbjct 232986 AATCGCTGTTGGTCCGGTGGGATACCTTCTTTATCTTGAATCTTAGCCTTGACATTTTCT 232927 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || | ||| || || |||||||| || || || || || || || || || ||||| Sbjct 232926 ATGGTATCCGACGCCTCAACTTCGAGGGTTATAGTTTTACCCGTTAGGGTTTTTACGAAA 232867 Query 288466 ATCTGCATT 288474 || |||||| Sbjct 232866 ATTTGCATT 232858 >seq571 Length=387064 Score = 89.7 bits (98), Expect = 1e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 72417 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 72476 ||||| ||| | ||||| | ||||| ||||| || |||||||| |||||||||| |||| Sbjct 135176 CAAGCTTCTACTTCAGAACTCTATGGGAAAGTACATGAAATTCCACAGACGGAAACTACT 135235 Query 72477 CCGTTTTATCCTCGAAGCCCTTACGGT 72503 || |||||||||||| ||||||||| Sbjct 135236 CCATTTTATCCTCGATCTCCTTACGGT 135262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179175850336836