Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq989 87.8 1e-12 seq318 82.4 6e-11 seq45 82.4 6e-11 >seq989 Length=57822 Score = 87.8 bits (96), Expect = 1e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 108883 GCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCC 108942 ||| | |||||||| |||||||||||||||||||||||||| |||||||||||| | || Sbjct 45140 GCTTTGGGCGAGGGCTGGCACAACTACCACCACGTGTTCCCTTACGACTACAAGACGGCT 45199 Query 108943 GAGTTGGG 108950 ||| |||| Sbjct 45200 GAGCTGGG 45207 >seq318 Length=1623050 Score = 82.4 bits (90), Expect = 6e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACA-CGACGGCCGACCCACACAACGCCAACAG 108533 || ||||||||||| ||||||| ||| || | |||| |||||||| |||||||| || || Sbjct 479369 GACCACAGGGTTCATCACAAGTTCTCGGAAACCGAC-GCCGACCCCCACAACGCGAAGAG 479427 Query 108534 GGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGT 108587 || |||| ||||| ||||| || |||||| | | | || |||| ||||| Sbjct 479428 AGGCTTCTTCTTCTCACACGTTGGCTGGCTCCTCGTAAGAAAACACCCTGACGT 479481 >seq45 Length=864215 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 108447 ACAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC 108506 ||||||| | ||| | |||||| ||||| | |||||||||||| | |||| || Sbjct 707574 ACAGAACTCTATCTTCGATTGGGTGAGAGATCATCGTATTCACCACAAGTTCACTGAGAC 707515 Query 108507 -GACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCA 108565 ||| || ||||| |||||||| || ||||||| | ||||| |||||||| ||||| | Sbjct 707514 AGAC-GCGGACCCGCACAACGCGAAGCGGGGGTTGTTCTTCTCTCACGTGGGCTGGCTTA 707456 Query 108566 TGATGACCAAGGACCCCGACGT 108587 || || || ||||||| || Sbjct 707455 TGCAGAAGAAACACCCCGAAGT 707434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381625481273328