Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq623 98.7 1e-15 seq583 84.2 2e-11 >seq623 Length=111817 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | || | ||| ||||| | | |||| || || || |||||||| || | Sbjct 107648 CCACCTCGGAGGCGAAGAACCAAATGCAGGGTTGATTCTTTCTGGATGTTGTAATC--TG 107705 Query 138448 ATA--GTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 ||| ||||| ||||| | ||| || || | | |||| || ||||| ||| | |||| Sbjct 107706 ATAAGGTACGGCCATCCTCCAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGGCCAGGAG 107765 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | |||||||| ||||| ||| ||| ||| | | || | ||| || | | ||| | Sbjct 107766 GGATACCTTCCTTGTCCTGGATCTTTGCTTTCACGTTCTCAATGGTATCAGCTGGCTCTA 107825 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | || || || ||||| || || ||||||||||||||| Sbjct 107826 CCTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAAATCTGCATG 107875 >seq583 Length=527131 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/166 (72%), Gaps = 5/166 (3%) Strand=Plus/Minus Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || | ||| || || | | |||| | |||||||||||||| || ||||||||||| Sbjct 233013 TCTTCTAATTGCTTCCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCTTCTTTA 232954 Query 138520 TCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| | || | || | | ||| | ||| || | || ||| || |||| || | Sbjct 232953 TC-TTGAATCTTAGCCTTGACATTTTCTATGGTATCCGACGCCTCAACTTCGAGGGTTAT 232895 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT---GGCTTAT 138621 |||||||| || || |||||||| ||||| ||||| ||||||| Sbjct 232894 AGTTTTACCCGTTAGGGTTTTTACGAAAATTTGCATTCCGGCTTAT 232849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496065991748640