Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq950 120 2e-22 seq70 102 6e-17 seq623 95.1 9e-15 seq583 95.1 9e-15 seq1183 91.5 1e-13 >seq950 Length=836093 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||||||||| | || | || | |||||| ||||| || || || || || ||||| Sbjct 302150 TGCCACCTCGAAGCCTGAGGACGAGATGAAGTGTAGATTCCTTCTGGATATTATAATCAG 302209 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| ||| | || || | || |||||||| | |||| ||||| ||||| || Sbjct 302210 AGAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGTG 302269 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||||||||||||||| || ||| ||| ||| | || || ||||| ||| | Sbjct 302270 GAATTCCTTCCTTGTCTTGGATCTTGGCTTTCACATTCTCAATCGTATCAGATGCTTCCA 302329 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | ||||| |||||||| || || ||||||||||| || ||||| ||||| Sbjct 302330 CTTCTAAAGTAATGGTCTTGCCAGTCAGAGTTTTCACGAAAATCTGCAT 302378 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || ||||| ||||| || || || ||||| ||| ||| | || || | || Sbjct 297503 TGGAGTGTAGACTCTTTCTGGATATTATAATCTGAGAGGGTTCGGCCATCCTCCAGCTGC 297562 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 |||||||| | |||| ||||| ||||| |||||| ||||| ||||| || ||| Sbjct 297563 TTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCCTGGATCTTG 297622 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| || | || || ||||| | ||||| || | ||||||||||| |||||| Sbjct 297623 GCTTTCACGTTCTCAATTGTATCAGAAGCCTCTACTTCCAGAGTAATGGTTTTTCCTGTC 297682 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | ||||| ||||| || ||||| Sbjct 297683 AAGGTTTTGACAAATATCTGCAT 297705 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/204 (70%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || || || ||||| || |||||||||| || | | | || || | || Sbjct 300672 ATGGAGTGTTGATTCTTTCTGGTTGTTGTAATCC---AGTGTGCGTCCATCCTCCAGCTG 300728 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||||| | |||| |||||||| || |||||||||||| ||||| ||| || Sbjct 300729 CTTGCCAGCAAAGATCAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTT 300788 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||| ||| | || || ||||| | ||||| || || || || || || ||||| Sbjct 300789 GGCTTTAACATTCTCAATCGTATCAGAAGCCTCTACTTCCAATGTGATTGTCTTGCCTGT 300848 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 |||||| || ||||| || ||||| Sbjct 300849 CAGAGTCTTAACAAAGATCTGCAT 300872 Score = 82.4 bits (90), Expect = 5e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 14987 CTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15046 |||| || |||||||| || | | ||| | ||||| | || |||||||| | | Sbjct 301961 CTTTCTGGATGTTGTAGTCCGACAAAGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGA 302020 Query 15047 TCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTT 15106 ||| ||||| ||||| |||||| ||||||||||| || ||| ||| ||| | | Sbjct 302021 TCAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTGGCTTTCACATTCT 302080 Query 15107 CTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15166 | || ||||| || || || || ||||| ||||| ||||||| ||||| || | Sbjct 302081 CAATCGTATCTGATGCCTCCACTTCCAAAGTAATCGTTTTGCCTGTCAAGGTTTTGACGA 302140 Query 15167 AAATTTGCAT 15176 | || ||||| Sbjct 302141 ATATCTGCAT 302150 >seq70 Length=429657 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||| | | | ||| || || ||||| || ||||| || ||||||||||| || Sbjct 142576 CCACCTCGGAGGCGAAGAACCAAGTGCAGGGTTGATTCTTTATGGATGTTGTAATC--TG 142519 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || | || || ||||| |||||||| | || ||||| ||||| | | Sbjct 142518 ATAAGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAAATTAAACGTTGTTGATGAGGAG 142459 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||||||||||||||| |||||| | ||| | |||| | || || ||| | Sbjct 142458 GAATTCCTTCCTTGTCCTGAATTTTTCGTTTCAAGTTTTCAACGGTGTCAGATGGTTCAA 142399 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||||||||||| || || ||||| || ||||| | |||||| Sbjct 142398 CTTCAAGAGTAATGGTTTTTCCAGTGAGAGTCTTCACAAAGACTTGCAT 142350 >seq623 Length=111817 Score = 95.1 bits (104), Expect = 9e-15 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||| | | | ||| ||||| ||||| || ||||| || |||||||||| ||| Sbjct 107648 CCACCTCGGAGGCGAAGAACCAAATGCAGGGTTGATTCTTTCTGGATGTTGTAAT--CTG 107705 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || | | | || || ||||| |||||||| | || | ||||| ||| | | Sbjct 107706 ATAAGGTACGGCCATCCTCCAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGGCCAGGAG 107765 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATC-GCTATTTTC 15125 | || ||||||||||| || ||||| ||| || | || || ||||| ||| || Sbjct 107766 GGATACCTTCCTTGTCCTGGATCTTTGC-TTTCACGTTCTCAATGGTATCAGCT-GGCTC 107823 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || | || ||||| || |||||||| || || |||||||| ||||| Sbjct 107824 TACCTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAAATCTGCAT 107874 Score = 82.4 bits (90), Expect = 5e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||| || || || || || | || ||||| ||||| || ||||||||||||||| Sbjct 110365 TCTTCCAACTGCTTTCCTGCAAAAATTAAACGTTGTTGATCAGGAGGAATTCCTTCCTTG 110424 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || |||||| ||| || |||| || || || |||| || || | ||||| Sbjct 110425 TCCTGAATTTTTGCTTTAACGTTTTCAATGGTGTCAGACGTTTCCACTTCAAGAATAATG 110484 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || ||||| || ||||| |||||||| Sbjct 110485 GTTTTTCCAGTGAGAGTCTTCACAAAGATTTGCAT 110519 >seq583 Length=527131 Score = 95.1 bits (104), Expect = 9e-15 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||||||||| || ||||| | ||||| ||||||||||| ||| || ||||| || Sbjct 233013 TCTTCTAATTGCTTCCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCTTCTTTA 232954 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || ||| || || ||| ||||||| ||||| || || || | ||| || Sbjct 232953 TCTTGAATCTTAGCCTTGACATTTTCTATGGTATCCGACGCCTCAACTTCGAGGGTTATA 232894 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||||||| || || |||||||| ||||||||||| Sbjct 232893 GTTTTACCCGTTAGGGTTTTTACGAAAATTTGCAT 232859 >seq1183 Length=31732 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||| | | | ||| || || ||||| || |||| || ||||||||||| || Sbjct 15425 CCACCTCGGAGGCGAAGAACCAAGTGCAGGGTTGATCCTTTCTGGATGTTGTAATC--TG 15482 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || | ||||| ||||| |||||||| | || | ||||| || || | Sbjct 15483 ATAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAACATAAGTCGCTGCTGCTCAGGGG 15542 Query 15068 GAATTCCTTCCTTGTC--ACAAATTTTGCTTTTTACAATTTCTATAGTATC-GCTATTTT 15124 | || ||||||||||| || |||| | |||| | | || || ||||| ||| | Sbjct 15543 GGATACCTTCCTTGTCCTGCAGCTTTT--TCTTTAGATTCTCAATGGTATCAGCT-GGCT 15599 Query 15125 CTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| || | || ||||| || |||||||| || || |||||||| |||||| Sbjct 15600 CTACCTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAAATCTGCATA 15652 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | || || || || ||||| || ||||| || |||||||||| ||| Sbjct 15653 CCACCACGCAGACGCAATACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAAT--CTG 15710 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || | | | ||||| ||||| |||||||| | || | ||||| || || | Sbjct 15711 ATAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGCTCAGGGG 15770 Query 15068 GAATTCCTTCCTTGTC--ACAAATTTTGCTTTTTACAATTTCTATAGTATC-GCTATTTT 15124 | || ||||||||||| || |||| | |||| | | || || ||||| ||| | Sbjct 15771 GGATACCTTCCTTGTCCTGCAGCTTTT--TCTTTAGATTCTCAATGGTATCAGCT-GGCT 15827 Query 15125 CTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| || | || ||||| || |||||||| || || || ||||| ||||| Sbjct 15828 CTACCTCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 15879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357254089351670