Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq583 104 2e-17 seq950 91.5 1e-13 seq1183 82.4 7e-11 >seq583 Length=527131 Score = 104 bits (114), Expect = 2e-17 Identities = 142/198 (72%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || |||||||| ||||| || ||||||| ||| |||| || || ||||| ||||| Sbjct 233046 TTCTGAATATTATAATCCGACAACGTGCGACCATCTTCTAATTGCTTCCCAGCAAAGATC 232987 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 |||||||| || || || || || || || || || || || ||||| | ||| Sbjct 232986 AATCGCTGTTGGTCCGGTGGGATACCTTCTTTATCTTGAATCTTAGCCTTGACATTTTCT 232927 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||| |||| ||| ||||||| ||| | ||||| || || || |||||||| ||| Sbjct 232926 ATGGTATCCGACGCCTCAACTTCGAGGGTTATAGTTTTACCCGTTAGGGTTTTTACGAAA 232867 Query 127106 ATCTGCAT---GGCTTAT 127120 || ||||| ||||||| Sbjct 232866 ATTTGCATTCCGGCTTAT 232849 >seq950 Length=836093 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||||||||| || ||||| ||||| | || || ||| || ||||| || ||| Sbjct 297509 GTAGACTCTTTCTGGATATTATAATCTGAGAGGGTTCGGCCATCCTCCAGCTGCTTGCCA 297568 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| ||||||||| || || || ||||| || |||||| ||| || || Sbjct 297569 GCAAAGATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTC 297628 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | || || | | ||| ||||| | || | ||||| || |||| ||| Sbjct 297629 ACGTTCTCAATTGTATCAGAAGCCTCTACTTCCAGAGTAATGGTTTTTCCTGTCAAGGTT 297688 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 297689 TTGACAAATATCTGCATG 297706 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || || || ||||| ||||| | || || ||| || ||||| || ||| Sbjct 302182 GTAGATTCCTTCTGGATATTATAATCAGAGAGGGTTCGGCCATCCTCCAGCTGCTTGCCA 302241 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| ||||||||| || || || || || |||||||| ||| || || Sbjct 302242 GCAAAGATCAGTCGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCTTTC 302301 Query 127037 AGTTGTTCGACGGTGTCCG-TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | || | || || | | || || ||||| | || | || ||||| |||||||| Sbjct 302302 ACATTCTCAATCGTATCAGATGCT-TCCACTTCTAAAGTAATGGTCTTGCCAGTCAGAGT 302360 Query 127096 TTTTACAAAAATCTGCATG 127114 ||| || |||||||||||| Sbjct 302361 TTTCACGAAAATCTGCATG 302379 >seq1183 Length=31732 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| ||||| || | || || ||||| || || |||||||| Sbjct 15653 CCACCACGCAGACGCAATACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCTGAT 15712 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || | || || ||||| |||| | ||||||||| || || || Sbjct 15713 AAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATAAGTCGCTGCTGCTCAGGGGGG 15772 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||||||| | || | ||| || | || | ||| || | ||| || Sbjct 15773 ATACCTTCCTTGTCCTGCAGCTTTTTCTTTAGATTCTCAATGGTATCAGCTGGCTCTACC 15832 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || || || ||||| || || || |||||||||||| Sbjct 15833 TCCAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATG 15880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475312608670880