Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zootermopsis_20nevadensis_20[genbank_20GCA_5F000696155.1_202014-06- 05] 31,662 sequences; 485,009,472 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq950 116 9e-21 seq623 104 6e-17 seq1183 95.1 3e-14 >seq950 Length=836093 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| || ||||| || || || || || ||||| |||| || || |||| | || Sbjct 302157 TCGAAGCCTGAGGACGAGATGAAGTGTAGATTCCTTCTGGATATTATAATCAGAGAGGGT 302216 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| ||||||||||| || || ||||| || ||||||||||| || |||||| Sbjct 302217 TCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGTGGAATTCC 302276 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || ||||| ||||| || | || || | || ||| || || || Sbjct 302277 TTCCTTGTCTTGGATCTTGGCTTTCACATTCTCAATCGTATCAGATGCTTCCACTTCTAA 302336 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||||||||| ||||| || Sbjct 302337 AGTAATGGTCTTGCCAGTCAGAGTTTTCACGAAAATCTG 302375 Score = 109 bits (120), Expect = 1e-18 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||||||||| || ||||| || |||| ||||||||| | |||||| | ||||| Sbjct 298987 AGCACAAGGTGGAGTGTAGACTCTTTCTGGATGTTGTAGTCTGACAAAGTTCGGCCATCC 299046 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| || ||||||||||| || ||| ||||| ||| Sbjct 299047 TCCAGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCC 299106 Query 199538 TGAATCTT 199545 || ||||| Sbjct 299107 TGGATCTT 299114 Score = 102 bits (112), Expect = 2e-16 Identities = 147/207 (71%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 199420 GACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTC 199479 ||| || ||||| || || || || ||| |||||| || || || | |||||| || Sbjct 300666 GACCAGATGGAGTGTTGATTCTTTCTGGTTGTTGTAATC---CAGTGTGCGTCCATCCTC 300722 Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTG 199539 ||||||||| || || ||||| || ||||| || || || |||||||||| ||||| Sbjct 300723 CAGCTGCTTGCCAGCAAAGATCAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTG 300782 Query 199540 AATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTT 199599 |||||| || || || | || || | | ||||| ||||| ||||| ||||| Sbjct 300783 AATCTTGGCTTTAACATTCTCAATCGTATCAGAAGCCTCTACTTCCAATGTGATTGTCTT 300842 Query 199600 ACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || || Sbjct 300843 GCCTGTCAGAGTCTTAACAAAGATCTG 300869 Score = 102 bits (112), Expect = 2e-16 Identities = 136/188 (72%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||| ||||||||| | |||||| | ||||||||||||||||| || || ||| Sbjct 301960 CCTTTCTGGATGTTGTAGTCCGACAAAGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 302019 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 || || ||||||||||| || ||| ||||| || || ||||| ||||| Sbjct 302020 ATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTGGCTTTCACATTC 302079 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 || | || |||| || || || ||||| || ||||| || || || | ||||| || Sbjct 302080 TCAATCGTATCTGATGCCTCCACTTCCAAAGTAATCGTTTTGCCTGTCAAGGTTTTGACG 302139 Query 199619 AAAATTTG 199626 || || || Sbjct 302140 AATATCTG 302147 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||||||||| || ||||| || |||| || || || | | || | ||||| Sbjct 297494 AGCACAAGGTGGAGTGTAGACTCTTTCTGGATATTATAATCTGAGAGGGTTCGGCCATCC 297553 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| || ||||||||||| || ||| |||||| ||| Sbjct 297554 TCCAGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCC 297613 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | || || | | ||||| |||| || || || Sbjct 297614 TGGATCTTGGCTTTCACGTTCTCAATTGTATCAGAAGCCTCTACTTCCAGAGTAATGGTT 297673 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||||| ||||| || || Sbjct 297674 TTTCCTGTCAAGGTTTTGACAAATATCTG 297702 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| || ||||| ||||| || || || ||||| |||| || || || | | || Sbjct 297712 TCGAAGCCTGAGGACGAGGTGAAGTGTAGATTCCTTCTGGATATTATAATCTGAGAGGGT 297771 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| |||||||| || || || ||||| || ||||||||||| || |||||| Sbjct 297772 TCGGCCATCCTCCAGCTGTTTGCCAGCAAAGATCAGTCGCTGCTGGTCTGGTGGAATTCC 297831 Query 199528 TTCTCGCTCCTGAATCTT 199545 |||| ||||| ||||| Sbjct 297832 TTCTTTGTCCTGGATCTT 297849 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 200934 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 200993 ||| ||||| || || |||||| |||| ||||| | |||||| | || |||||| |||| Sbjct 299073 ACTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGAACTTTGTCAGACTACAACATCCA 299014 Query 200994 GAAAGAGTCTACTCTTCACCTTGT 201017 |||||||||||| || |||||||| Sbjct 299013 GAAAGAGTCTACACTCCACCTTGT 298990 >seq623 Length=111817 Score = 104 bits (114), Expect = 6e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || || || || |||| |||||| || | || || | ||||| |||| ||| Sbjct 107672 TGCAGGGTTGATTCTTTCTGGATGTTGTAATCTGATAAGGTACGGCCATCCTCCAATTGC 107731 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || ||||| || ||||||||| | ||| || ||||| ||||| |||||| Sbjct 107732 TTGCCAGCAAAGATAAGTCGCTGCTGGCCAGGAGGGATACCTTCCTTGTCCTGGATCTTT 107791 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 |||||| || | ||| || | || ||||| |||| ||||| ||||| || || Sbjct 107792 GCTTTCACGTTCTCAATGGTATCAGCTGGCTCTACCTCCAGAGTGATGGTCTTCCCTGTC 107851 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || || ||||||||||| || Sbjct 107852 AGGGTCTTCACAAAAATCTG 107871 >seq1183 Length=31732 Score = 95.1 bits (104), Expect = 3e-14 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 || || | ||| || || || |||||| |||| |||||| || | || || | ||||| Sbjct 15440 AGAACCAAGTGCAGGGTTGA-TCCTTTCTGGATGTTGTAATCTGATAAGGTGCGGCCATC 15498 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||| ||||| || || || || || |||||||| || || || ||||| || Sbjct 15499 TTCCAATTGCTTGCCAGCAAACATAAGTCGCTGCTGCTCAGGGGGGATACCTTCCTTGTC 15558 Query 199537 CTGAATCTTTTGCTTCACGGATTCG--ACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 ||| | ||||| ||| | ||||| | ||| || | || ||||| |||| ||||| Sbjct 15559 CTGCAGCTTTTTCTTTA--GATTCTCAATGGTATCAGCTGGCTCTACCTCCAGAGTGATG 15616 Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || ||||||||||| || Sbjct 15617 GTCTTCCCTGTCAGGGTCTTCACAAAAATCTG 15648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178443347611354